Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   RIU97_RS37880 Genome accession   NZ_CP134201
Coordinates   8229453..8230454 (+) Length   333 a.a.
NCBI ID   WP_404961997.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 8224453..8235454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS37865 (RIU97_37775) - 8225943..8227613 (+) 1671 WP_404961994.1 ABC transporter substrate-binding protein -
  RIU97_RS37870 (RIU97_37780) - 8227610..8228578 (+) 969 WP_404961995.1 ABC transporter permease -
  RIU97_RS37875 (RIU97_37785) - 8228575..8229453 (+) 879 WP_404961996.1 ABC transporter permease -
  RIU97_RS37880 (RIU97_37790) amiE 8229453..8230454 (+) 1002 WP_404961997.1 ABC transporter ATP-binding protein Regulator
  RIU97_RS37885 (RIU97_37795) - 8230451..8231320 (+) 870 WP_404961998.1 ATP-binding cassette domain-containing protein -
  RIU97_RS37890 (RIU97_37800) - 8231425..8232228 (+) 804 WP_404961999.1 class I SAM-dependent methyltransferase -
  RIU97_RS37895 (RIU97_37805) - 8232310..8232408 (-) 99 Protein_7479 hypothetical protein -
  RIU97_RS37900 (RIU97_37810) - 8232448..8233455 (-) 1008 WP_404962000.1 NAD-dependent epimerase/dehydratase family protein -
  RIU97_RS37905 (RIU97_37815) - 8233651..8234292 (-) 642 WP_404962001.1 TetR/AcrR family transcriptional regulator -
  RIU97_RS37910 (RIU97_37820) - 8234407..8234808 (+) 402 WP_404962002.1 VOC family protein -
  RIU97_RS37915 (RIU97_37825) - 8234813..8235319 (-) 507 WP_404962003.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 34978.19 Da        Isoelectric Point: 6.4956

>NTDB_id=802525 RIU97_RS37880 WP_404961997.1 8229453..8230454(+) (amiE) [Streptomyces sp. 147326]
MTLLAYEDLSVSLPAMARPILDGVTLRVSAGEVVALVGESGSGKSVTARAALGLFPAGAEVGGRVRVDGTDLVGADAASL
RHVRTDRAAMIYQDPRAAVNPVRRVGDFLTEPLRLVHGWSRAQADARAAELLGAVGLPDPARHLNQYPHELSGGMLQRVV
IAAALTAEPRLLLCDEPTTALDVSTQAEILAVLGRLQRERGLGLLLITHDIELAAAVSDRIYVMYAGRIVETAPVGELFT
SPRHPYTAGLLGSAPPLDGPPVRLTPIPGAPMGLLESAPGCAFAPRCRFAEPGRCDQSPPLLQRHGPAEVACHRTAELAA
APAPSLASRTEDR

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=802525 RIU97_RS37880 WP_404961997.1 8229453..8230454(+) (amiE) [Streptomyces sp. 147326]
ATGACACTGCTCGCCTACGAAGACCTCAGCGTCTCGTTGCCCGCCATGGCCCGCCCGATCCTGGACGGCGTCACCCTGCG
GGTCTCCGCGGGAGAAGTCGTCGCGCTGGTCGGCGAATCCGGCTCGGGGAAATCCGTCACCGCCCGCGCCGCCCTCGGCC
TGTTCCCGGCGGGAGCCGAAGTCGGCGGCCGGGTGCGCGTCGACGGGACCGACCTGGTCGGCGCCGACGCCGCGAGCCTG
CGCCACGTACGGACCGACAGGGCGGCGATGATCTACCAGGATCCGCGGGCCGCCGTCAACCCGGTCCGCCGCGTCGGAGA
CTTCCTCACCGAGCCGCTGCGCCTGGTCCACGGCTGGTCCAGGGCCCAAGCCGACGCCCGGGCGGCCGAACTCCTCGGCG
CGGTGGGCCTGCCCGACCCCGCCCGGCACCTGAACCAGTACCCGCACGAGCTCTCCGGCGGAATGCTCCAGCGCGTCGTG
ATCGCCGCCGCCCTCACGGCGGAACCGAGGCTGCTGCTGTGCGACGAGCCGACCACCGCACTCGACGTCAGCACCCAGGC
CGAGATCCTCGCCGTCCTGGGACGGCTCCAGCGCGAACGCGGCCTCGGCCTCCTCCTGATCACGCACGACATCGAGCTCG
CCGCCGCGGTCAGCGACCGGATCTACGTGATGTACGCGGGCCGGATCGTCGAGACCGCGCCCGTGGGGGAACTCTTCACC
TCGCCCCGCCACCCCTACACCGCCGGCCTGCTCGGTTCCGCCCCGCCGCTCGACGGCCCGCCCGTCCGCCTCACCCCCAT
CCCCGGCGCCCCGATGGGCCTGCTGGAGTCCGCTCCCGGCTGCGCCTTCGCGCCCCGGTGCCGCTTCGCCGAACCCGGCC
GCTGCGACCAGTCCCCGCCCCTGCTGCAACGGCACGGCCCGGCCGAGGTCGCGTGCCACCGCACCGCCGAACTGGCCGCG
GCGCCCGCGCCTTCCCTCGCATCCCGCACGGAGGACCGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

38.554

99.7

0.384

  amiE Streptococcus thermophilus LMG 18311

37.952

99.7

0.378

  amiE Streptococcus thermophilus LMD-9

37.952

99.7

0.378

  oppD Streptococcus mutans UA159

40.264

90.991

0.366