Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RIU97_RS27335 Genome accession   NZ_CP134201
Coordinates   5975818..5977551 (-) Length   577 a.a.
NCBI ID   WP_404960223.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5970818..5982551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS27315 (RIU97_27250) - 5971050..5972051 (-) 1002 WP_404960220.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  RIU97_RS27320 (RIU97_27255) - 5972021..5972605 (-) 585 WP_404960221.1 hypothetical protein -
  RIU97_RS27325 (RIU97_27260) rpoS 5972763..5973830 (+) 1068 WP_404962954.1 RNA polymerase sigma factor Regulator
  RIU97_RS27330 (RIU97_27265) rcrQ 5973899..5975821 (-) 1923 WP_404960222.1 ABC transporter ATP-binding protein Regulator
  RIU97_RS27335 (RIU97_27270) rcrP 5975818..5977551 (-) 1734 WP_404960223.1 ABC transporter ATP-binding protein Regulator
  RIU97_RS27340 (RIU97_27275) - 5977699..5979147 (-) 1449 WP_404960224.1 FGGY family carbohydrate kinase -
  RIU97_RS27345 (RIU97_27280) - 5979246..5979545 (-) 300 WP_404960225.1 YtxH domain-containing protein -
  RIU97_RS27365 (RIU97_27300) - 5980192..5981349 (-) 1158 WP_404960226.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62659.52 Da        Isoelectric Point: 5.0739

>NTDB_id=802508 RIU97_RS27335 WP_404960223.1 5975818..5977551(-) (rcrP) [Streptomyces sp. 147326]
MLIRLLRTHLGAYRKPIAVLVLLQLLQTSASLYLPTLNADIIDQGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVRLSGV
LLAVVPVLGIAVGAIVFRTRPLFRQMQDRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLASGKLLAY
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PTDPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLARTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWQALEVAQAKEFVSALEGGLEAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=802508 RIU97_RS27335 WP_404960223.1 5975818..5977551(-) (rcrP) [Streptomyces sp. 147326]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTGCGTACCGGAAACCCATCGCGGTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACACTGAACGCCGACATCATCGACCAGGGTGTCGTCAACGGCGACACCGGTTACA
TCCTCCGCTTCGGCGCCCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGTCTGCAACGTCGGCGCCGTCTACTACGGCGCC
CGTACGGCGGCGGCCTTCGGCCGGGACGTCCGCGCGGCCGTCTTCGACCGCGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGCGCCCCGTCCCTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTCTCGGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCGCTGGACGTGCGACTGTCGGGCGTC
CTCCTCGCCGTGGTCCCGGTGCTCGGGATCGCGGTCGGTGCCATCGTCTTCAGGACGCGGCCGCTGTTCCGCCAGATGCA
GGACCGTCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGTTTCCGCGAGGCCAACGCCGACCTGACCGGCGTCTCACTGGCCTCCGGCAAGCTCCTGGCGTAC
ATGTTCCCCACGGTCATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCGTGGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTGCCG
CCCACCGACCCGGTGCGCGAACTCGCCCGCCGCGGGCGCCTGGAGCTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGACCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACGCTGCTGGGCCTGGTCCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTGGTCGACGGGGAGGACGTGCGC
CGGCTCGACCCGGAGCTGCTGGCCCGGACGGTCGGCATGGTTCCGCAGAAGCCCTACCTGTTCTCCGGAACCATCGCCTC
CAACCTGCGCTACGGGCGCCCGGACGCGAGTGACGAAGAGCTGTGGCAGGCGCTGGAAGTGGCGCAGGCCAAGGAGTTCG
TGTCCGCACTGGAGGGTGGCCTGGAGGCCCCCGTCGCCCAGGGCGGAACCAATGTCTCGGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACCCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCTGCGCTCTCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTGGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.675

97.574

0.397