Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RIU97_RS27330 Genome accession   NZ_CP134201
Coordinates   5973899..5975821 (-) Length   640 a.a.
NCBI ID   WP_404960222.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5968899..5980821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS27310 (RIU97_27245) - 5968965..5971049 (+) 2085 WP_404960219.1 molybdopterin oxidoreductase family protein -
  RIU97_RS27315 (RIU97_27250) - 5971050..5972051 (-) 1002 WP_404960220.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  RIU97_RS27320 (RIU97_27255) - 5972021..5972605 (-) 585 WP_404960221.1 hypothetical protein -
  RIU97_RS27325 (RIU97_27260) rpoS 5972763..5973830 (+) 1068 WP_404962954.1 RNA polymerase sigma factor Regulator
  RIU97_RS27330 (RIU97_27265) rcrQ 5973899..5975821 (-) 1923 WP_404960222.1 ABC transporter ATP-binding protein Regulator
  RIU97_RS27335 (RIU97_27270) rcrP 5975818..5977551 (-) 1734 WP_404960223.1 ABC transporter ATP-binding protein Regulator
  RIU97_RS27340 (RIU97_27275) - 5977699..5979147 (-) 1449 WP_404960224.1 FGGY family carbohydrate kinase -
  RIU97_RS27345 (RIU97_27280) - 5979246..5979545 (-) 300 WP_404960225.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68804.19 Da        Isoelectric Point: 5.1054

>NTDB_id=802507 RIU97_RS27330 WP_404960222.1 5973899..5975821(-) (rcrQ) [Streptomyces sp. 147326]
MSGPGGRMMMGPAQRSMDFKGSGKRLLGQLAHDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGTTK
QQALDGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTIQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALATVPLSVFVAAKIGKKS
QPQFVAQWKTTGALNAHVEEMYSGHSLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDASEQDADAEVPERPEELRGQVTFDKV
AFRYEPDKPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRTGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASDGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=802507 RIU97_RS27330 WP_404960222.1 5973899..5975821(-) (rcrQ) [Streptomyces sp. 147326]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCATGGATTTCAAGGGCTCGGGCAAGCGGCTGCT
GGGGCAGCTCGCGCACGACCGCGCCAAGATCTGGGGCATGGTCGCGGCCGTGGTCGGCAGCGTCGGCTGCGCGGTGGTCG
GCCCAAAGATCCTGGGCGAGGCCACCGACCTGGTCTTCGCCGGGATCGTGGGCCGGGAGATGCCGGCCGGCACCACGAAG
CAGCAGGCCCTGGACGGGCTGCGCGCCAGGGGCCAGGACGGCATGGCGGACATGCTCGCCGGCACCGACTTCACTCCGGG
GCAGGGCATCGACTTCGGCGCGGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTCGCCGGCCTGCTGATGC
TGGTCGCGACCCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATCGACAACATCGG
CCAGACGATCCAGCAGACGATGGGCCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTCGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGCGACCGTGCCGCTGTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACGACCGGCGCGCTCAACGCCCACGTCGAGGAGATGTACTCGGGGCACAGCCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCCCTCTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCCAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCGGAGCGCGTCTACGAGCTGCTGG
ACGCGTCGGAGCAGGACGCGGACGCCGAGGTTCCGGAGCGTCCGGAGGAGCTGCGCGGCCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGTCGGTCGAGCCGGGTCACACCGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACGACGCTCGTGAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACGCGCGAGGAACTGCGCACCGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCCTCGCGGGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCGGACCGTTTCATCCGCACCCTGCCGGACGGCTACGACACCGTCCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCAGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGTCGGACGGTGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGTCGAAGTCGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.775

97.031

0.386