Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RIU97_RS14565 Genome accession   NZ_CP134201
Coordinates   3329989..3331080 (-) Length   363 a.a.
NCBI ID   WP_078893002.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3324989..3336080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS14545 (RIU97_14515) - 3325201..3326124 (-) 924 WP_404956852.1 ABC transporter permease -
  RIU97_RS14550 (RIU97_14520) - 3326156..3327787 (-) 1632 WP_404956854.1 ABC transporter substrate-binding protein -
  RIU97_RS14555 (RIU97_14525) - 3327894..3328820 (-) 927 WP_404956857.1 GNAT family N-acetyltransferase -
  RIU97_RS14560 (RIU97_14530) - 3328944..3329996 (-) 1053 WP_404956859.1 ABC transporter ATP-binding protein -
  RIU97_RS14565 (RIU97_14535) amiE 3329989..3331080 (-) 1092 WP_078893002.1 ABC transporter ATP-binding protein Regulator
  RIU97_RS14570 (RIU97_14540) - 3331090..3332013 (-) 924 WP_404956862.1 ABC transporter permease -
  RIU97_RS14575 (RIU97_14545) - 3332037..3332963 (-) 927 WP_404956864.1 ABC transporter permease -
  RIU97_RS14580 (RIU97_14550) - 3333161..3334813 (-) 1653 WP_404956866.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39296.26 Da        Isoelectric Point: 6.5892

>NTDB_id=802477 RIU97_RS14565 WP_078893002.1 3329989..3331080(-) (amiE) [Streptomyces sp. 147326]
MPRDNISKQDEGGGVTTSEILSVAETGGGSAVPLLEVDNLQVEFKTRDGVAKAVNGVSYSVNAGETLAVLGESGSGKSVT
AQAIMGILDSPPGRIAGGEVRFHGKDILKMSDEERRKLRGNKMAMIFQDALSSLNPVYSVGDQLGEMFRVHRGMSKKDSK
VKAVELMDRVKIPAAKARVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREMNMGLI
LITHDLGVVADVADKIAVMYAGRIVETAPVHEIYKRPSHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLRIPAGCAFSP
RCPKAQDICRTEIPVLHPVTEQDGTELPGRGSACHFWKEQIHG

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=802477 RIU97_RS14565 WP_078893002.1 3329989..3331080(-) (amiE) [Streptomyces sp. 147326]
ATGCCCCGAGACAACATCAGCAAGCAGGACGAAGGTGGCGGCGTGACGACGTCGGAGATTCTCAGCGTTGCGGAGACGGG
TGGCGGGTCCGCCGTGCCGCTGCTGGAGGTGGACAACCTCCAGGTCGAGTTCAAGACCCGTGACGGGGTCGCCAAGGCCG
TCAACGGCGTGAGCTACAGCGTCAACGCCGGCGAGACCCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCGGTCACC
GCACAGGCGATCATGGGCATTCTCGACAGCCCGCCCGGACGGATCGCCGGCGGCGAGGTGCGCTTCCACGGCAAGGACAT
CCTCAAGATGTCCGACGAGGAGCGCCGCAAGCTCCGCGGCAACAAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCCC
TGAACCCGGTCTACTCGGTGGGCGACCAGCTCGGCGAGATGTTCCGGGTCCACCGCGGCATGTCCAAGAAGGACTCGAAG
GTCAAGGCCGTCGAGCTCATGGACCGCGTGAAGATCCCCGCCGCCAAGGCGCGCGTGGGCGACTACCCGCACCAGTTCTC
CGGCGGTATGCGCCAGCGCATCATGATCGCCATGGCGCTGGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCCACCA
CGGCTCTCGACGTGACGGTCCAGGCGCAGGTCATGGACCTGCTCGCGGAGCTCCAGCGCGAGATGAACATGGGCCTGATC
CTGATCACCCACGACCTCGGCGTCGTCGCCGACGTCGCGGACAAGATCGCGGTCATGTACGCGGGCCGGATCGTCGAGAC
CGCTCCGGTCCACGAGATCTACAAGCGCCCGTCCCACCCGTACACCCGCGGCCTGCTCGACTCGATCCCGCGCCTGGACC
AGAAGGGCCAGGAGCTCTACGCGATCAAGGGTCTGCCGCCCAACCTGCTCCGCATTCCCGCGGGCTGCGCCTTCAGCCCC
CGCTGTCCCAAGGCGCAGGACATCTGCCGTACGGAGATCCCCGTACTGCACCCCGTCACCGAGCAGGACGGCACCGAACT
GCCCGGCCGCGGCAGCGCGTGCCACTTCTGGAAGGAGCAGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(55-213)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(265-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

49.324

81.543

0.402
  amiE Streptococcus thermophilus LMD-9

49.324

81.543

0.402
  amiE Streptococcus salivarius strain HSISS4

49.324

81.543

0.402
  oppD Streptococcus mutans UA159

46.753

84.848

0.397