Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   RIU97_RS11190 Genome accession   NZ_CP134201
Coordinates   2581810..2582604 (+) Length   264 a.a.
NCBI ID   WP_030709636.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2576810..2587604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS11180 (RIU97_11150) - 2577741..2580629 (-) 2889 WP_404955757.1 vitamin B12-dependent ribonucleotide reductase -
  RIU97_RS11185 (RIU97_11155) nrdR 2580801..2581313 (-) 513 WP_404955759.1 transcriptional regulator NrdR -
  RIU97_RS11190 (RIU97_11160) dinR/lexA 2581810..2582604 (+) 795 WP_030709636.1 transcriptional repressor LexA Regulator
  RIU97_RS11195 (RIU97_11165) - 2582750..2584720 (-) 1971 WP_404955762.1 ATP-dependent DNA helicase -
  RIU97_RS11200 (RIU97_11170) - 2584773..2586701 (-) 1929 WP_404955765.1 IucA/IucC family protein -
  RIU97_RS11205 (RIU97_11175) - 2586800..2587498 (-) 699 WP_404955767.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28602.40 Da        Isoelectric Point: 7.4238

>NTDB_id=802461 RIU97_RS11190 WP_030709636.1 2581810..2582604(+) (dinR/lexA) [Streptomyces sp. 147326]
MTTTADSATITAQNRSQSRLEPVHAMNDANLNPDAEPVVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=802461 RIU97_RS11190 WP_030709636.1 2581810..2582604(+) (dinR/lexA) [Streptomyces sp. 147326]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGATGCGGAGCCCGTAGTACGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCG
CCGACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGTCGGGGATACCCG
CCGTCCATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCGTCGGTCGCCCACCAGCTGATGGCCCTCGAGCG
GAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGCGCCTACGAGGTACGCGGCTCCGACCAGCCCAGCTCGCAGCCCA
CGGACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TCGCCGCCATGCTCGACGGTGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATTCCCGGCGACGACGCGACCATCCTCGGCAAGGTCGTCGCGGTGCTGCGTCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375