Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU97_RS08220 Genome accession   NZ_CP134201
Coordinates   1804071..1804706 (+) Length   211 a.a.
NCBI ID   WP_361762995.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799071..1809706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS08200 (RIU97_08165) - 1800030..1800833 (+) 804 WP_404954682.1 IclR family transcriptional regulator -
  RIU97_RS08205 (RIU97_08170) - 1800930..1801649 (-) 720 WP_404954684.1 ABC transporter ATP-binding protein -
  RIU97_RS08210 (RIU97_08175) - 1801646..1802731 (-) 1086 WP_404954686.1 ABC transporter permease -
  RIU97_RS08215 (RIU97_08180) - 1802866..1804068 (+) 1203 WP_404954688.1 sensor histidine kinase -
  RIU97_RS08220 (RIU97_08185) vraR 1804071..1804706 (+) 636 WP_361762995.1 response regulator transcription factor Regulator
  RIU97_RS08225 (RIU97_08190) - 1804792..1805163 (+) 372 WP_404954691.1 peptidoglycan-binding protein -
  RIU97_RS08230 (RIU97_08195) - 1805201..1806688 (-) 1488 WP_404954693.1 PLP-dependent aminotransferase family protein -
  RIU97_RS08235 (RIU97_08200) - 1806926..1807537 (+) 612 WP_404954695.1 NTP transferase domain-containing protein -
  RIU97_RS08240 (RIU97_08205) aceB 1807790..1809409 (+) 1620 WP_404954697.1 malate synthase A -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22094.45 Da        Isoelectric Point: 5.6743

>NTDB_id=802456 RIU97_RS08220 WP_361762995.1 1804071..1804706(+) (vraR) [Streptomyces sp. 147326]
MTIRLLLADDHPVVRAGLRAVLDTEADFAVVAEAATAERAVELAASEPVDVVLMDLQFGPGPGMHGSEATALITARPGSP
RVLVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVA
DGLSNQQISKKLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLIRTP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=802456 RIU97_RS08220 WP_361762995.1 1804071..1804706(+) (vraR) [Streptomyces sp. 147326]
ATGACGATCCGGCTGCTGCTCGCCGACGACCATCCGGTGGTCCGGGCGGGGCTGCGCGCGGTCCTGGACACCGAGGCGGA
CTTCGCGGTGGTCGCCGAGGCCGCGACCGCCGAGCGGGCGGTGGAGCTGGCCGCGTCCGAGCCGGTGGACGTGGTGCTGA
TGGACCTCCAGTTCGGGCCCGGCCCCGGCATGCACGGCTCCGAGGCGACGGCCCTGATCACGGCCCGCCCGGGCTCCCCC
CGGGTGCTGGTCCTGACGACGTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCGGGAGCCTCGGGCTACCTGCT
CAAGGACGCCCCGCCCGAGGAACTGGCGGCGGCGGTGCGCACGGCCGCCGCGGGCCAGTCGGCGCTGGCCCCGGCGGTGG
CGCTGCGGCTGATGGACCGGATGCGGACCCCGGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTGCTGCAGCTGGTCGCG
GACGGCCTGTCCAACCAGCAGATCTCGAAGAAGCTCTTCCTCAGCCAGGCCACGGTCAAGTCCCACCTGGTGCACGTCTA
CGCCAAGCTCGGCGTCGACTCCCGCACCTCGGCGGTCGCGGCGGCCGCCACCCGCCGGCTGATCCGCACGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-119)

Bacterial regulatory proteins, luxR family (GerE)

(147-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.736

100

0.379