Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   L6484_RS09930 Genome accession   NZ_AP022964
Coordinates   1978543..1978830 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus strain J62     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1973543..1983830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6484_RS09910 - 1974717..1974916 (+) 200 Protein_1883 DUF4083 domain-containing protein -
  L6484_RS09915 (BCJMU62_1910) - 1974948..1975409 (+) 462 WP_000024996.1 NUDIX hydrolase -
  L6484_RS09920 (BCJMU62_1911) nadE 1975456..1976274 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  L6484_RS09925 (BCJMU62_1912) - 1976546..1978426 (+) 1881 WP_001026014.1 ABC transporter permease -
  L6484_RS09930 (BCJMU62_1913) abrB 1978543..1978830 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  L6484_RS09935 (BCJMU62_1914) - 1979105..1980055 (+) 951 WP_001089035.1 serine protease -
  L6484_RS09940 (BCJMU62_1915) - 1980096..1980404 (-) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  L6484_RS09945 (BCJMU62_1916) - 1980512..1981447 (+) 936 WP_000877938.1 aldo/keto reductase -
  L6484_RS09950 (BCJMU62_1917) - 1981496..1982671 (+) 1176 WP_000832302.1 MFS transporter -
  L6484_RS09955 (BCJMU62_1918) - 1982860..1983084 (-) 225 WP_000162601.1 hypothetical protein -
  L6484_RS09960 (BCJMU62_1919) - 1983169..1983516 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=80245 L6484_RS09930 WP_000648331.1 1978543..1978830(+) (abrB) [Bacillus cereus strain J62]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=80245 L6484_RS09930 WP_000648331.1 1978543..1978830(+) (abrB) [Bacillus cereus strain J62]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment