Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   RI106_RS13630 Genome accession   NZ_CP134071
Coordinates   2774718..2775431 (-) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain 4233     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2769718..2780431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS13600 (RI106_13600) sph 2770496..2771320 (-) 825 Protein_2634 sphingomyelin phosphodiesterase -
  RI106_RS13605 (RI106_13605) - 2771377..2772414 (-) 1038 WP_000857198.1 site-specific integrase -
  RI106_RS13610 (RI106_13610) - 2772473..2772937 (-) 465 WP_000825947.1 hypothetical protein -
  RI106_RS13615 (RI106_13615) - 2773037..2773219 (-) 183 WP_000705248.1 hypothetical protein -
  RI106_RS13620 (RI106_13620) - 2773423..2773764 (-) 342 WP_000591749.1 hypothetical protein -
  RI106_RS13625 (RI106_13625) - 2773770..2774702 (-) 933 WP_160191697.1 exonuclease domain-containing protein -
  RI106_RS13630 (RI106_13630) irvR 2774718..2775431 (-) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  RI106_RS13635 (RI106_13635) - 2775394..2775567 (+) 174 WP_001801500.1 hypothetical protein -
  RI106_RS13640 (RI106_13640) - 2775564..2775827 (+) 264 WP_061823675.1 helix-turn-helix transcriptional regulator -
  RI106_RS13645 (RI106_13645) - 2775843..2776058 (+) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  RI106_RS13650 (RI106_13650) - 2776047..2776376 (-) 330 WP_000128907.1 hypothetical protein -
  RI106_RS13655 (RI106_13655) - 2776427..2777179 (+) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  RI106_RS13660 (RI106_13660) - 2777195..2777392 (+) 198 WP_160191699.1 hypothetical protein -
  RI106_RS13665 (RI106_13665) - 2777379..2777759 (-) 381 WP_000762521.1 DUF2513 domain-containing protein -
  RI106_RS13670 (RI106_13670) - 2777814..2778137 (+) 324 WP_061823677.1 DUF771 domain-containing protein -
  RI106_RS13675 (RI106_13675) - 2778134..2778295 (+) 162 WP_000048129.1 DUF1270 family protein -
  RI106_RS13680 (RI106_13680) - 2778390..2778692 (+) 303 WP_000165371.1 DUF2482 family protein -
  RI106_RS13685 (RI106_13685) - 2778697..2778957 (+) 261 WP_000291510.1 DUF1108 family protein -
  RI106_RS13690 (RI106_13690) - 2778966..2779229 (+) 264 WP_001205732.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=802445 RI106_RS13630 WP_001031454.1 2774718..2775431(-) (irvR) [Staphylococcus aureus strain 4233]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=802445 RI106_RS13630 WP_001031454.1 2774718..2775431(-) (irvR) [Staphylococcus aureus strain 4233]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401