Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P3U36_RS04205 Genome accession   NZ_CP120056
Coordinates   924181..924897 (-) Length   238 a.a.
NCBI ID   WP_322214983.1    Uniprot ID   X2J834
Organism   Staphylococcus pseudintermedius strain Dog129     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 919181..929897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U36_RS04190 (P3U36_04190) - 920686..921633 (+) 948 WP_129949527.1 LacI family DNA-binding transcriptional regulator -
  P3U36_RS04195 (P3U36_04195) - 921689..923173 (+) 1485 WP_275312680.1 sucrose-6-phosphate hydrolase -
  P3U36_RS04200 (P3U36_04200) - 923177..924121 (+) 945 WP_322214982.1 carbohydrate kinase -
  P3U36_RS04205 (P3U36_04205) agrA 924181..924897 (-) 717 WP_322214983.1 quorum-sensing response regulator AgrA Regulator
  P3U36_RS04210 (P3U36_04210) agrC 924911..926203 (-) 1293 WP_096636795.1 quorum-sensing sensor histidine kinase AgrC -
  P3U36_RS04215 (P3U36_04215) agrD 926226..926363 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide AgrD -
  P3U36_RS04220 (P3U36_04220) - 926365..926931 (-) 567 WP_096636794.1 accessory gene regulator AgrB -
  P3U36_RS13860 - 927323..927400 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  P3U36_RS04225 (P3U36_04225) - 927688..928491 (-) 804 WP_322214984.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28075.25 Da        Isoelectric Point: 5.6951

>NTDB_id=802308 P3U36_RS04205 WP_322214983.1 924181..924897(-) (agrA) [Staphylococcus pseudintermedius strain Dog129]
MKILICEDDRKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=802308 P3U36_RS04205 WP_322214983.1 924181..924897(-) (agrA) [Staphylococcus pseudintermedius strain Dog129]
ATGAAAATTTTGATTTGTGAGGATGATCGTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGAAGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTACTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.353

100

0.824