Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RIF20_RS11600 Genome accession   NZ_CP134068
Coordinates   2331464..2332309 (-) Length   281 a.a.
NCBI ID   WP_001566903.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 63     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2326464..2337309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS11565 (RIF20_11565) rpsR 2327449..2327691 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  RIF20_RS11570 (RIF20_11570) ssbA 2327743..2328246 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  RIF20_RS11575 (RIF20_11575) rpsF 2328267..2328563 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  RIF20_RS11580 (RIF20_11580) - 2328807..2328998 (+) 192 WP_001052483.1 hypothetical protein -
  RIF20_RS11585 (RIF20_11585) ychF 2329084..2330181 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  RIF20_RS11590 (RIF20_11590) - 2330193..2330396 (-) 204 WP_000157349.1 DUF951 domain-containing protein -
  RIF20_RS11595 (RIF20_11595) - 2330426..2331307 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  RIF20_RS11600 (RIF20_11600) spo0J 2331464..2332309 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein Regulator
  RIF20_RS11605 (RIF20_11605) - 2332973..2334076 (+) 1104 WP_000655703.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  RIF20_RS11610 (RIF20_11610) metC 2334073..2335233 (+) 1161 WP_000175846.1 cystathionine beta-lyase MetC -
  RIF20_RS11615 (RIF20_11615) - 2335202..2337043 (+) 1842 WP_000077320.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32869.88 Da        Isoelectric Point: 10.0091

>NTDB_id=802306 RIF20_RS11600 WP_001566903.1 2331464..2332309(-) (spo0J) [Staphylococcus aureus strain 63]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFLRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=802306 RIF20_RS11600 WP_001566903.1 2331464..2332309(-) (spo0J) [Staphylococcus aureus strain 63]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTCTAAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384