Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RIF20_RS09515 Genome accession   NZ_CP134068
Coordinates   1921954..1923036 (-) Length   360 a.a.
NCBI ID   WP_001641371.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 63     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1916954..1928036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS09495 (RIF20_09495) - 1917563..1917667 (-) 105 WP_001790092.1 hypothetical protein -
  RIF20_RS09500 (RIF20_09500) secA 1917709..1920240 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  RIF20_RS09505 (RIF20_09505) hpf 1920654..1921226 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RIF20_RS09510 (RIF20_09510) - 1921287..1921961 (-) 675 WP_001057965.1 ComF family protein -
  RIF20_RS09515 (RIF20_09515) comFA 1921954..1923036 (-) 1083 WP_001641371.1 DEAD/DEAH box helicase Machinery gene
  RIF20_RS09520 (RIF20_09520) fakB1 1923400..1924266 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  RIF20_RS09525 (RIF20_09525) - 1924410..1925051 (+) 642 WP_000192949.1 YigZ family protein -
  RIF20_RS09530 (RIF20_09530) - 1925223..1926278 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  RIF20_RS09535 (RIF20_09535) - 1926596..1927666 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42132.71 Da        Isoelectric Point: 9.7626

>NTDB_id=802294 RIF20_RS09515 WP_001641371.1 1921954..1923036(-) (comFA) [Staphylococcus aureus strain 63]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=802294 RIF20_RS09515 WP_001641371.1 1921954..1923036(-) (comFA) [Staphylococcus aureus strain 63]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.348

94.167

0.361