Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RIF20_RS06010 Genome accession   NZ_CP134068
Coordinates   1170734..1172413 (+) Length   559 a.a.
NCBI ID   WP_000942211.1    Uniprot ID   A0A0H2XGI0
Organism   Staphylococcus aureus strain 63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165734..1177413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS05980 (RIF20_05980) - 1166587..1166949 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  RIF20_RS05985 (RIF20_05985) nusB 1167009..1167398 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  RIF20_RS05990 (RIF20_05990) xseA 1167415..1168752 (+) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  RIF20_RS05995 (RIF20_05995) - 1168745..1168975 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  RIF20_RS06000 (RIF20_06000) - 1168953..1169834 (+) 882 WP_000183371.1 polyprenyl synthetase family protein -
  RIF20_RS06005 (RIF20_06005) ahrC 1170266..1170718 (+) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  RIF20_RS06010 (RIF20_06010) recN 1170734..1172413 (+) 1680 WP_000942211.1 DNA repair protein RecN Machinery gene
  RIF20_RS06015 (RIF20_06015) lpdA 1172564..1173985 (+) 1422 WP_001291533.1 dihydrolipoyl dehydrogenase -
  RIF20_RS06020 (RIF20_06020) - 1174001..1174993 (+) 993 WP_000568351.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  RIF20_RS06025 (RIF20_06025) - 1174993..1175976 (+) 984 WP_001096630.1 alpha-ketoacid dehydrogenase subunit beta -
  RIF20_RS06030 (RIF20_06030) - 1175989..1177263 (+) 1275 WP_000406848.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64295.87 Da        Isoelectric Point: 4.7316

>NTDB_id=802261 RIF20_RS06010 WP_000942211.1 1170734..1172413(+) (recN) [Staphylococcus aureus strain 63]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELISDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=802261 RIF20_RS06010 WP_000942211.1 1170734..1172413(+) (recN) [Staphylococcus aureus strain 63]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCATCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCTGAATATATACAAGTTATTTGTATCTCTCACTTACCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTAGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XGI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44