Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   P3U28_RS07795 Genome accession   NZ_CP120050
Coordinates   1597440..1598510 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog132     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592440..1603510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U28_RS07755 (P3U28_07755) gcvPA 1592617..1593963 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  P3U28_RS07760 (P3U28_07760) gcvT 1593983..1595074 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  P3U28_RS07765 (P3U28_07765) - 1595233..1595757 (-) 525 WP_001015120.1 shikimate kinase -
  P3U28_RS07770 (P3U28_07770) - 1595747..1595893 (-) 147 WP_001789879.1 hypothetical protein -
  P3U28_RS07775 (P3U28_07775) comGF 1595990..1596487 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3U28_RS07780 (P3U28_07780) comGE 1596405..1596704 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P3U28_RS07785 (P3U28_07785) comGD 1596691..1597137 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3U28_RS07790 (P3U28_07790) comGC 1597115..1597426 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  P3U28_RS07795 (P3U28_07795) comGB 1597440..1598510 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3U28_RS07800 (P3U28_07800) comGA 1598482..1599456 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  P3U28_RS07805 (P3U28_07805) - 1599508..1600131 (-) 624 WP_320409472.1 MBL fold metallo-hydrolase -
  P3U28_RS07810 (P3U28_07810) - 1600128..1600457 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  P3U28_RS07815 (P3U28_07815) - 1600457..1601443 (-) 987 WP_000161315.1 ROK family glucokinase -
  P3U28_RS07820 (P3U28_07820) - 1601440..1601643 (-) 204 WP_000087561.1 YqgQ family protein -
  P3U28_RS07825 (P3U28_07825) - 1601624..1603087 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=802243 P3U28_RS07795 WP_000776422.1 1597440..1598510(-) (comGB) [Staphylococcus aureus strain Dog132]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=802243 P3U28_RS07795 WP_000776422.1 1597440..1598510(-) (comGB) [Staphylococcus aureus strain Dog132]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATAAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1