Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RIF20_RS04040 Genome accession   NZ_CP134068
Coordinates   801000..801818 (+) Length   272 a.a.
NCBI ID   WP_001124422.1    Uniprot ID   P66002
Organism   Staphylococcus aureus strain 63     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 796000..806818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS04015 (RIF20_04015) - 796617..797147 (+) 531 WP_000184383.1 acyl-CoA thioesterase -
  RIF20_RS04020 (RIF20_04020) yfkAB 797407..798558 (-) 1152 WP_001089622.1 radical SAM/CxCxxxxC motif protein YfkAB -
  RIF20_RS04025 (RIF20_04025) - 798782..798943 (+) 162 WP_001005407.1 SE1561 family protein -
  RIF20_RS04030 (RIF20_04030) - 799074..799589 (+) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  RIF20_RS04035 (RIF20_04035) sgtB 799930..800739 (+) 810 WP_000830380.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  RIF20_RS04040 (RIF20_04040) recX 801000..801818 (+) 819 WP_001124422.1 recombination regulator RecX Regulator
  RIF20_RS04045 (RIF20_04045) - 801796..802110 (+) 315 WP_000435806.1 YfhH family protein -
  RIF20_RS04050 (RIF20_04050) - 802125..803642 (+) 1518 WP_000535834.1 ABC transporter ATP-binding protein -
  RIF20_RS04055 (RIF20_04055) - 803651..804487 (+) 837 WP_000886456.1 hypothetical protein -
  RIF20_RS04060 (RIF20_04060) - 804748..805725 (-) 978 WP_000379098.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32259.10 Da        Isoelectric Point: 5.9211

>NTDB_id=802238 RIF20_RS04040 WP_001124422.1 801000..801818(+) (recX) [Staphylococcus aureus strain 63]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
IQYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=802238 RIF20_RS04040 WP_001124422.1 801000..801818(+) (recX) [Staphylococcus aureus strain 63]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGACGAACAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAACAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
ATACAATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCGGAAAGTTTAAAGAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTATATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAAGGGCCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAGAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66002

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.632

100

0.996