Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q2K21_RS19070 Genome accession   NZ_CP134053
Coordinates   4447330..4447914 (+) Length   194 a.a.
NCBI ID   WP_310772483.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.7035     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4442330..4452914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2K21_RS35805 - 4443851..4443982 (+) 132 Protein_3778 IS3 family transposase -
  Q2K21_RS19050 (Q2K21_19050) - 4444216..4445628 (-) 1413 WP_310772479.1 non-reducing end alpha-L-arabinofuranosidase family hydrolase -
  Q2K21_RS35810 - 4445754..4445979 (-) 226 Protein_3780 xylosidase -
  Q2K21_RS19060 (Q2K21_19060) - 4446690..4446836 (+) 147 WP_310772481.1 hypothetical protein -
  Q2K21_RS19065 (Q2K21_19065) - 4447058..4447348 (-) 291 Protein_3782 hypothetical protein -
  Q2K21_RS19070 (Q2K21_19070) vraR 4447330..4447914 (+) 585 WP_310772483.1 response regulator transcription factor Regulator
  Q2K21_RS19075 (Q2K21_19075) - 4448093..4448938 (-) 846 WP_310772485.1 oxidoreductase -
  Q2K21_RS19080 (Q2K21_19080) - 4449045..4449959 (+) 915 WP_310772487.1 LysR family transcriptional regulator -
  Q2K21_RS19085 (Q2K21_19085) - 4449979..4450368 (+) 390 WP_310772489.1 hypothetical protein -
  Q2K21_RS19090 (Q2K21_19090) - 4450617..4451837 (+) 1221 WP_310772491.1 metallophosphoesterase -
  Q2K21_RS19095 (Q2K21_19095) - 4451886..4452056 (+) 171 WP_310772493.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21330.56 Da        Isoelectric Point: 9.4746

>NTDB_id=802017 Q2K21_RS19070 WP_310772483.1 4447330..4447914(+) (vraR) [Streptomyces sp. CGMCC 4.7035]
MPWRASGSSRRADAGELQPDVVLMDIRMPGMDGLEAARRIAADQQLAAVKVVMLTTFDLDEYVYGALRAGATGFLVKDTE
PAELLHAVRVAARGDALISPSITRRLIAEFANRPDNTRKPDRRLDALTGREREVMQLIAAGRTNDEIAAQLVVSPLTAKT
HVSRIMAKLGARDRSQVVVMAYEYRMVSPGWLTD

Nucleotide


Download         Length: 585 bp        

>NTDB_id=802017 Q2K21_RS19070 WP_310772483.1 4447330..4447914(+) (vraR) [Streptomyces sp. CGMCC 4.7035]
GTGCCATGGCGCGCCAGCGGATCCTCGCGTCGAGCCGATGCTGGCGAACTGCAGCCCGACGTGGTGCTCATGGACATCCG
CATGCCCGGCATGGACGGACTGGAAGCCGCTCGTCGCATCGCCGCCGACCAGCAATTGGCGGCAGTGAAGGTGGTCATGC
TGACGACTTTCGACCTGGACGAGTACGTGTACGGAGCCTTGCGGGCCGGCGCCACCGGCTTCCTCGTCAAGGACACCGAA
CCGGCAGAACTCCTGCACGCGGTGCGCGTCGCCGCGCGAGGCGACGCGCTCATCAGCCCCTCCATCACCCGCCGACTCAT
CGCCGAATTCGCCAACCGCCCGGACAACACCCGCAAGCCCGACCGTCGCCTTGATGCCCTGACCGGCCGCGAACGCGAAG
TCATGCAGCTGATCGCGGCCGGGCGCACCAATGACGAGATCGCCGCACAGCTGGTGGTCTCCCCGCTGACCGCGAAGACC
CATGTCAGCCGCATCATGGCCAAACTCGGGGCCCGGGATAGATCCCAAGTCGTGGTCATGGCCTATGAGTACCGCATGGT
CAGCCCCGGTTGGCTCACGGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(126-181)

Response regulator receiver domain (Response_reg)

(11-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.344

94.33

0.371