Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   Q2K21_RS05570 Genome accession   NZ_CP134053
Coordinates   1367950..1368924 (+) Length   324 a.a.
NCBI ID   WP_310766030.1    Uniprot ID   A0ABV7SHR5
Organism   Streptomyces sp. CGMCC 4.7035     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362950..1373924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2K21_RS05555 (Q2K21_05555) - 1364392..1366014 (+) 1623 WP_310766024.1 ABC transporter substrate-binding protein -
  Q2K21_RS05560 (Q2K21_05560) - 1366048..1366971 (+) 924 WP_310766026.1 ABC transporter permease -
  Q2K21_RS05565 (Q2K21_05565) - 1366964..1367944 (+) 981 WP_310766028.1 ABC transporter permease -
  Q2K21_RS05570 (Q2K21_05570) amiE 1367950..1368924 (+) 975 WP_310766030.1 ABC transporter ATP-binding protein Regulator
  Q2K21_RS05575 (Q2K21_05575) - 1368917..1369999 (+) 1083 WP_310766032.1 dipeptide ABC transporter ATP-binding protein -
  Q2K21_RS05580 (Q2K21_05580) - 1370152..1372272 (-) 2121 WP_310766035.1 prolyl oligopeptidase family serine peptidase -
  Q2K21_RS05585 (Q2K21_05585) - 1372476..1372670 (+) 195 WP_310766038.1 hypothetical protein -
  Q2K21_RS05590 (Q2K21_05590) mshB 1372721..1373683 (+) 963 WP_310766040.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35600.35 Da        Isoelectric Point: 6.7627

>NTDB_id=801988 Q2K21_RS05570 WP_310766030.1 1367950..1368924(+) (amiE) [Streptomyces sp. CGMCC 4.7035]
MLLEVRDLHVEFRTRDGIAKAVGGVSYGVDAGETLAVLGESGSGKSVTAQAVMGILDMPPGRITGGEILFQGQDLLRLKE
EERRRIRGAQMAMIFQDALSSLNPVLSVGDQLGEMFVVHRGMSKKDARAKAVDLMDRVRIPAAAQRVRDYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLAELQREYRMGLVLITHDLGVVADVADRIAVMYAGRIVESAPVHD
IYKAPAHPYTRGLLDSIPRLDRKGKELYAIKGLPPNLMNIPPGCAFHPRCPMAQDVCRTDVPPLYEVSDDRVSACHFWRE
CLHG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=801988 Q2K21_RS05570 WP_310766030.1 1367950..1368924(+) (amiE) [Streptomyces sp. CGMCC 4.7035]
GTGCTGCTGGAAGTGCGCGACCTGCACGTGGAGTTCCGGACCCGGGACGGGATCGCCAAGGCCGTGGGCGGCGTCAGCTA
CGGCGTGGACGCGGGCGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGTAAGTCCGTCACCGCGCAGGCCGTCATGG
GGATCCTCGACATGCCTCCCGGCCGGATCACCGGCGGCGAGATCCTCTTCCAAGGGCAGGACCTGCTCCGGCTGAAAGAA
GAGGAGCGGCGCAGGATCCGCGGCGCGCAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCGTTGAACCCCGTGCTCTC
CGTCGGCGACCAGCTCGGCGAGATGTTCGTCGTGCACCGGGGCATGTCGAAGAAGGACGCGCGCGCCAAGGCCGTCGACC
TCATGGACCGGGTGCGGATCCCGGCCGCCGCGCAGCGCGTGCGCGACTATCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCGCTGGAGCCCGCGCTGATCATCGCCGACGAGCCCACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTGCTCGCGGAATTGCAGCGCGAGTACCGCATGGGCCTCGTCCTCATCACCCATGACC
TCGGCGTCGTCGCGGACGTCGCCGACCGGATCGCCGTCATGTACGCGGGCCGGATCGTCGAGTCCGCCCCCGTGCACGAC
ATCTACAAGGCGCCCGCACACCCCTATACGCGGGGCCTGCTCGACTCCATCCCGCGGCTCGACCGGAAGGGCAAGGAGCT
CTATGCCATCAAGGGCCTGCCGCCGAATCTCATGAACATCCCGCCGGGCTGTGCCTTCCACCCGCGCTGCCCCATGGCCC
AGGACGTGTGCCGGACCGATGTGCCCCCGCTCTACGAGGTCTCCGACGACCGGGTGAGCGCCTGCCACTTCTGGAGGGAG
TGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(24-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.664

99.074

0.472
  oppD Streptococcus mutans UA159

48.408

96.914

0.469
  amiE Streptococcus thermophilus LMG 18311

46.729

99.074

0.463
  amiE Streptococcus thermophilus LMD-9

46.729

99.074

0.463