Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   Q2K21_RS02100 Genome accession   NZ_CP134053
Coordinates   486283..487692 (-) Length   469 a.a.
NCBI ID   WP_310763341.1    Uniprot ID   A0ABV7SCC4
Organism   Streptomyces sp. CGMCC 4.7035     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 481283..492692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2K21_RS02075 (Q2K21_02075) - 481693..482649 (-) 957 WP_310763336.1 A/G-specific adenine glycosylase -
  Q2K21_RS02080 (Q2K21_02080) - 483204..483512 (-) 309 WP_310763337.1 hypothetical protein -
  Q2K21_RS02085 (Q2K21_02085) - 483672..484466 (+) 795 WP_310763338.1 hypothetical protein -
  Q2K21_RS02090 (Q2K21_02090) - 484474..484827 (-) 354 WP_310763339.1 DUF6204 family protein -
  Q2K21_RS02095 (Q2K21_02095) disA 485077..486201 (-) 1125 WP_310763340.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  Q2K21_RS02100 (Q2K21_02100) radA/sms 486283..487692 (-) 1410 WP_310763341.1 DNA repair protein RadA Machinery gene
  Q2K21_RS02105 (Q2K21_02105) - 488079..489812 (+) 1734 WP_310763342.1 hypothetical protein -
  Q2K21_RS02110 (Q2K21_02110) - 489871..490719 (-) 849 WP_310763343.1 hypothetical protein -
  Q2K21_RS02115 (Q2K21_02115) - 490791..491723 (+) 933 WP_310763344.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49825.96 Da        Isoelectric Point: 7.7378

>NTDB_id=801977 Q2K21_RS02100 WP_310763341.1 486283..487692(-) (radA/sms) [Streptomyces sp. CGMCC 4.7035]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGASAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=801977 Q2K21_RS02100 WP_310763341.1 486283..487692(-) (radA/sms) [Streptomyces sp. CGMCC 4.7035]
ATGGCTGCCCGTACGAAAACCACCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGTGCGTCCGCCGTACGGACGACGACCCCGGGCC
GGGTGACGACGTCCGCCGTGCCCATCGGCCAGGTCGACGGGCGGCAGGCCACAGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTCCTCGGCGGCGGGCTCGTGCCGGGCGCGGTCGTGCTGCTCGCCGGCGAGCCCGGCGTCGGCAAGTCCACCCT
CCTGCTGGACGTCGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGCTGTATGTGACGGGTGAGGAGTCGGCGAGCCAGG
TGCGCCTGCGCGCCGACCGCATCAAGGCCATCGACGACCACCTCTACCTGGCCGCCGAGACCGATCTGGCCGCCGTACTC
GGCCACTTGGACGCGGTGAAGCCCTCGCTCCTCATCCTCGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGACGGTGC
GCCCGGCGGCATGGCCCAGGTGCGCGAGGTCGCCGGGGCACTCATCCGCGCCTCCAAGGATCGCGGCATGTCCACCCTCC
TGGTGGGCCACGTCACAAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTCGAACACCTTGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTCGTACGGGGCGTCAAGAACCGATACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGAATCACGGGCCTGGCCGACCCCAGCGGCCTGTTCCTCACCCGCCGCGACGAGCCGGTCCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTGGCGGAGGTCCAGGCACTGACCGTCGACTCGCAGATC
CCCTCCCCGCGGCGTACGACATCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAACAGCGCGGCCG
CATCAGCGCACTGGGCAAGCGGGACATCTACTCCGCGACCGTCGGCGGGGTCAAGCTCTCCGAACCGGCCGCGGACCTGG
CGATCGCGCTCGCGCTGGCGAGCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAAGTGGGCCTG
GCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCCGACTGGCCGAAGCACACCGTCTGGGCTTCACGCACGCGCTCGT
ACCGACCGACCCGGGCAAGGTCCCGCCCGGGATGAAGGTGCTGGAAGTGGCGGACATGGGGGACGCCCTGCGGGTCCTTC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis NCTC 12261

42.984

95.736

0.412
  radA Streptococcus mitis SK321

42.984

95.736

0.412
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407