Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RHT75_RS15620 Genome accession   NZ_CP133927
Coordinates   3192937..3193566 (-) Length   209 a.a.
NCBI ID   WP_180207682.1    Uniprot ID   -
Organism   Escherichia coli strain M22546     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3187937..3198566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHT75_RS15605 (RHT75_15605) helD 3188179..3190233 (-) 2055 WP_001295938.1 DNA helicase IV -
  RHT75_RS15610 (RHT75_15610) yccF 3190356..3190802 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RHT75_RS15615 (RHT75_15615) yccS 3190812..3192974 (+) 2163 WP_000875041.1 YccS family putative transporter -
  RHT75_RS15620 (RHT75_15620) sxy/tfoX 3192937..3193566 (-) 630 WP_180207682.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RHT75_RS15625 (RHT75_15625) sulA 3193785..3194294 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  RHT75_RS15630 (RHT75_15630) ompA 3194650..3195702 (+) 1053 WP_311123092.1 porin OmpA -
  RHT75_RS15635 (RHT75_15635) matP 3195778..3196230 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  RHT75_RS15640 (RHT75_15640) ycbZ 3196416..3198176 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24197.09 Da        Isoelectric Point: 9.0428

>NTDB_id=801839 RHT75_RS15620 WP_180207682.1 3192937..3193566(-) (sxy/tfoX) [Escherichia coli strain M22546]
MKSFSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=801839 RHT75_RS15620 WP_180207682.1 3192937..3193566(-) (sxy/tfoX) [Escherichia coli strain M22546]
ATGAAAAGCTTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99