Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RHT75_RS09480 Genome accession   NZ_CP133927
Coordinates   1996363..1996839 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain M22546     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1991363..2001839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHT75_RS09430 (RHT75_09430) yeeA 1991921..1992979 (+) 1059 WP_001200889.1 FUSC family protein -
  RHT75_RS09435 (RHT75_09435) tmaR 1993151..1993480 (+) 330 WP_000450409.1 DUF496 family protein -
  RHT75_RS09440 (RHT75_09440) - 1993581..1993763 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  RHT75_RS25480 - 1993826..1993963 (+) 138 Protein_1854 transposase domain-containing protein -
  RHT75_RS09450 (RHT75_09450) - 1994252..1994344 (-) 93 Protein_1855 DUF957 domain-containing protein -
  RHT75_RS09455 (RHT75_09455) yeeW 1994378..1994572 (-) 195 WP_000988600.1 DUF5983 family protein -
  RHT75_RS09460 (RHT75_09460) cbtA 1994569..1994943 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  RHT75_RS09465 (RHT75_09465) cbeA 1995032..1995400 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  RHT75_RS09470 (RHT75_09470) - 1995416..1996060 (-) 645 WP_000086752.1 hypothetical protein -
  RHT75_RS09475 (RHT75_09475) - 1996079..1996300 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  RHT75_RS09480 (RHT75_09480) radC 1996363..1996839 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  RHT75_RS09485 (RHT75_09485) - 1996855..1997328 (-) 474 WP_001542276.1 antirestriction protein -
  RHT75_RS09490 (RHT75_09490) - 1997422..1997667 (-) 246 WP_001164966.1 hypothetical protein -
  RHT75_RS09495 (RHT75_09495) - 1997667..1998485 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  RHT75_RS09500 (RHT75_09500) - 1998706..1999116 (-) 411 WP_000846703.1 hypothetical protein -
  RHT75_RS09505 (RHT75_09505) - 1999132..1999809 (-) 678 WP_001362823.1 hypothetical protein -
  RHT75_RS09510 (RHT75_09510) - 1999945..2001015 (-) 1071 WP_000102631.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=801828 RHT75_RS09480 WP_001186200.1 1996363..1996839(-) (radC) [Escherichia coli strain M22546]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=801828 RHT75_RS09480 WP_001186200.1 1996363..1996839(-) (radC) [Escherichia coli strain M22546]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392