Detailed information NTG0801752

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RHT74_RS17860
• Genome accession: NZ_CP133923
• Coordinates: 3639625..3640617 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain M21816
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3634625..3645617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHT74_RS17840 (RHT74_17840)	ygbM	3635263..3636039 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
RHT74_RS17845 (RHT74_17845)	ygbN	3636128..3637492 (+)	1365	WP_000104433.1	GntP family transporter	-
RHT74_RS17850 (RHT74_17850)	-	3637635..3638678 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
RHT74_RS17855 (RHT74_17855)	-	3638903..3639454 (+)	552	WP_001179444.1	flavodoxin family protein	-
RHT74_RS17860 (RHT74_17860)	rpoS	3639625..3640617 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
RHT74_RS17865 (RHT74_17865)	nlpD	3640680..3641774 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
RHT74_RS17870 (RHT74_17870)	pcm	3641959..3642585 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
RHT74_RS17875 (RHT74_17875)	surE	3642579..3643340 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
RHT74_RS17880 (RHT74_17880)	truD	3643321..3644370 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
RHT74_RS17885 (RHT74_17885)	ispF	3644367..3644846 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RHT74_RS17890 (RHT74_17890)	ispD	3644846..3645556 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=801752 RHT74_RS17860 WP_000081550.1 3639625..3640617(-) (rpoS) [Escherichia coli strain M21816]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=801752 RHT74_RS17860 WP_000081550.1 3639625..3640617(-) (rpoS) [Escherichia coli strain M21816]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715