Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RHS39_RS15930 Genome accession   NZ_CP133900
Coordinates   3411078..3412913 (-) Length   611 a.a.
NCBI ID   WP_005497387.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3406078..3417913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS15905 (RHS39_15905) trxA 3406340..3406666 (-) 327 WP_005458583.1 thioredoxin TrxA -
  RHS39_RS15910 (RHS39_15910) rhlB 3406778..3408091 (+) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  RHS39_RS15915 (RHS39_15915) gppA 3408111..3409604 (+) 1494 WP_025789549.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  RHS39_RS15920 (RHS39_15920) - 3409801..3410469 (-) 669 WP_005497391.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  RHS39_RS15925 (RHS39_15925) - 3410763..3411068 (-) 306 WP_005458579.1 DUF3630 family protein -
  RHS39_RS15930 (RHS39_15930) recQ 3411078..3412913 (-) 1836 WP_005497387.1 ATP-dependent DNA helicase RecQ Machinery gene
  RHS39_RS15935 (RHS39_15935) rarD 3413088..3414002 (+) 915 WP_005497386.1 EamA family transporter RarD -
  RHS39_RS15940 (RHS39_15940) - 3414077..3414874 (+) 798 WP_021822348.1 AraC family transcriptional regulator -
  RHS39_RS15945 (RHS39_15945) - 3414966..3415625 (+) 660 WP_005458574.1 LysE family translocator -
  RHS39_RS15950 (RHS39_15950) ggt 3415736..3417496 (+) 1761 WP_025789550.1 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69213.10 Da        Isoelectric Point: 6.8897

>NTDB_id=801450 RHS39_RS15930 WP_005497387.1 3411078..3412913(-) (recQ) [Vibrio parahaemolyticus strain TW01]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPVSQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=801450 RHS39_RS15930 WP_005497387.1 3411078..3412913(-) (recQ) [Vibrio parahaemolyticus strain TW01]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGCTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGACACGAT
TTCCGTCCTGAATACGCCGCTCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGGTTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATTATTTATTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGCTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGTATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGTATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCGCAAACCTGTCGTCGTCAGGTACTGCTCAACTACTTTGGTGAGTACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGATTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
CGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(31-189)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393