Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P3T93_RS11305 Genome accession   NZ_CP119997
Coordinates   2291922..2293292 (-) Length   456 a.a.
NCBI ID   WP_019468584.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2286922..2298292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS11290 (P3T93_11295) cysE 2287929..2288570 (-) 642 WP_037539884.1 serine O-acetyltransferase -
  P3T93_RS11295 (P3T93_11300) gltX 2288895..2290349 (-) 1455 WP_323701713.1 glutamate--tRNA ligase -
  P3T93_RS11300 (P3T93_11305) - 2290789..2291847 (-) 1059 WP_019468583.1 PIN/TRAM domain-containing protein -
  P3T93_RS11305 (P3T93_11310) radA 2291922..2293292 (-) 1371 WP_019468584.1 DNA repair protein RadA Machinery gene
  P3T93_RS11310 (P3T93_11315) - 2293640..2296096 (-) 2457 WP_064264574.1 ATP-dependent Clp protease ATP-binding subunit -
  P3T93_RS11315 (P3T93_11320) - 2296108..2297118 (-) 1011 WP_323701976.1 protein arginine kinase -
  P3T93_RS11320 (P3T93_11325) - 2297111..2297662 (-) 552 WP_019468587.1 UvrB/UvrC motif-containing protein -
  P3T93_RS11325 (P3T93_11330) - 2297687..2298148 (-) 462 WP_019468588.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50377.86 Da        Isoelectric Point: 7.2493

>NTDB_id=801444 P3T93_RS11305 WP_019468584.1 2291922..2293292(-) (radA) [Staphylococcus cohnii strain Dog166]
MAKKKVVFECMACGYQSPKWMGKCPNCGGWNQMEEIIEQKTTSPKHGVRSRENTAKVQKLNDIKHETTPRIKTNSAEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQDKNVLYITGEESLNQTKLRADRLDEDSSNLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRIIIPESNIGGWEFPSNIKVIGVTNVHEALKYALTKH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=801444 P3T93_RS11305 WP_019468584.1 2291922..2293292(-) (radA) [Staphylococcus cohnii strain Dog166]
TTGGCCAAAAAGAAAGTGGTTTTTGAATGTATGGCGTGTGGTTACCAGTCGCCTAAATGGATGGGGAAATGTCCTAACTG
TGGTGGATGGAATCAAATGGAAGAAATAATAGAACAGAAAACGACAAGCCCGAAACATGGTGTGCGTAGTCGCGAAAATA
CTGCCAAAGTACAGAAGTTAAATGATATTAAGCATGAGACAACACCACGTATTAAAACGAATTCAGCAGAATTTAATCGA
GTACTTGGTGGCGGGATTGTAAATGGTTCGCTTGTATTAATTGGTGGTGATCCAGGTATCGGTAAATCAACACTATTATT
ACAAATATGTGCTGCATTATCACAAGATAAAAATGTTTTATATATAACTGGTGAAGAATCATTAAACCAAACAAAATTAA
GAGCGGATCGATTAGATGAAGACTCAAGTAATTTAAATGTATTTGCAGAAACAGATTTAGAAGTGATACATGAGACAGTT
AAACAATTGAAGCCTGATTTACTTGTTGTAGATTCTATACAGACCATTTTTCACCCTGAAATCAGTTCTGCACCCGGTTC
GGTTTCTCAGGTGAGGGAGAGTACACAAAGCTTGATGAATATAGCTAAACAACTAAATATTGCCACTTTTATTGTTGGTC
ATGTAACGAAAGAAGGTCAGATTGCAGGGCCTCGTCTGTTAGAACATATGGTAGATACGGTACTTTATTTTGAAGGTGAT
GAACATCATGCATATCGTATTTTAAGAGCAGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAATGAA
ACAGAGTGGATTGAAAGGTGTTAAAAACCCTTCAGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCAGGTTCGACAA
TCGTGTCTACTATGGAAGGTACAAGACCGTTATTAATTGAAGTTCAAGCCTTAGTAACGCCAACAACCTTTAATAACCCT
AGACGTATGGCTACAGGAATAGATCACAATCGTTTGAGTTTGTTGATGGCTGTATTAGAGAAAAAAGAGAATTATTTACT
GCAACAACAAGATGCTTATATTAAAGTAGCTGGTGGCGTAAGATTAACAGAACCTGCTGTCGATTTAGGAATCATTGTTG
CTACAGCCTCAAGTTTTAAAGATTTAACTGTAGACGGGTTAGATTGTTTTATTGGTGAGGTTGGTTTAACCGGAGAAGTG
AGACGTGTTTCACGCATTGAACAACGTGTACAAGAAGCGGAAAAACTAGGTTTTAAACGCATTATTATTCCTGAATCTAA
TATTGGGGGCTGGGAATTTCCTAGCAATATCAAAGTCATTGGTGTGACAAATGTGCACGAAGCATTAAAATATGCTTTAA
CCAAACATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

100

0.649
  radA Streptococcus pneumoniae Rx1

59.778

98.684

0.59
  radA Streptococcus pneumoniae D39

59.778

98.684

0.59
  radA Streptococcus pneumoniae R6

59.778

98.684

0.59
  radA Streptococcus pneumoniae TIGR4

59.778

98.684

0.59
  radA Streptococcus mitis NCTC 12261

59.778

98.684

0.59
  radA Streptococcus mitis SK321

59.778

98.684

0.59