Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RHS39_RS14155 Genome accession   NZ_CP133900
Coordinates   3030695..3032161 (+) Length   488 a.a.
NCBI ID   WP_005497310.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3025695..3037161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS14130 (RHS39_14130) - 3026815..3027780 (+) 966 WP_005455122.1 calcium/sodium antiporter -
  RHS39_RS14135 (RHS39_14135) kdsD 3027817..3028788 (+) 972 WP_005484881.1 arabinose-5-phosphate isomerase KdsD -
  RHS39_RS14140 (RHS39_14140) lptC 3028879..3029442 (+) 564 WP_005467805.1 LPS export ABC transporter periplasmic protein LptC -
  RHS39_RS14145 (RHS39_14145) lptA 3029423..3029917 (+) 495 WP_005467803.1 lipopolysaccharide transport periplasmic protein LptA -
  RHS39_RS14150 (RHS39_14150) lptB 3029919..3030644 (+) 726 WP_005467801.1 LPS export ABC transporter ATP-binding protein -
  RHS39_RS14155 (RHS39_14155) rpoN/rpoN1 3030695..3032161 (+) 1467 WP_005497310.1 RNA polymerase factor sigma-54 Machinery gene
  RHS39_RS14160 (RHS39_14160) hpf 3032186..3032473 (+) 288 WP_005467451.1 ribosome hibernation promoting factor -
  RHS39_RS14165 (RHS39_14165) ptsN 3032476..3032922 (+) 447 WP_005467453.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RHS39_RS14170 (RHS39_14170) rapZ 3032937..3033800 (+) 864 WP_005468663.1 RNase adapter RapZ -
  RHS39_RS14175 (RHS39_14175) - 3033803..3034078 (+) 276 WP_025787821.1 HPr family phosphocarrier protein -
  RHS39_RS14180 (RHS39_14180) mgtE 3034298..3035653 (+) 1356 WP_005468659.1 magnesium transporter -
  RHS39_RS14185 (RHS39_14185) pmbA 3035730..3037073 (-) 1344 WP_005459755.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 54809.62 Da        Isoelectric Point: 4.3378

>NTDB_id=801435 RHS39_RS14155 WP_005497310.1 3030695..3032161(+) (rpoN/rpoN1) [Vibrio parahaemolyticus strain TW01]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHEEPQANGEDKSALETADNSANEPTEIE
VPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIAIAIIDA
IDDYGYLTLSPEEIHESFNNEDIELDEVEAVRKRIQQFDPLGVASQNLQECLLLQLATFPEDTPWLAEAKMILADHIDHL
GNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTVSINPDSIPKLKVNQQYAQLG
KGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKF
MHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=801435 RHS39_RS14155 WP_005497310.1 3030695..3032161(+) (rpoN/rpoN1) [Vibrio parahaemolyticus strain TW01]
ATGAAACCTTCATTACAACTCAAGCTAGGTCAACAGTTAGCCATGACGCCACAGTTGCAACAAGCGATTCGCTTGCTGCA
GTTGTCGACTCTCGATCTTCAACAAGAAATCCAAGAAGCGTTGGACTCAAACCCACTATTGGAAGTTGAAGAAGGCCACG
AAGAACCTCAAGCAAATGGTGAAGACAAATCAGCACTCGAAACTGCTGACAACAGTGCCAACGAGCCAACAGAAATCGAA
GTTCCTGATAGTTCTGACGTCATCGAAAAGTCCGAAATCAGCTCAGAGCTTGAAATAGACACAACTTGGGATGATGTCTA
CAGCGCAAATACGGGCAGTACCGGTTTAGCGTTAGACGATGATATGCCGGTCTACCAAGGCGAAACCACAGAATCGCTAC
ACGATTACTTAATGTGGCAACTCGACTTAACGCCTTTCAGTGAGACCGACCGTACGATTGCCATTGCCATCATTGATGCG
ATTGACGATTACGGCTACCTGACCCTATCTCCTGAAGAAATTCACGAAAGCTTCAACAACGAAGATATTGAGTTGGATGA
AGTCGAAGCCGTGCGCAAACGCATCCAACAGTTTGACCCGCTTGGTGTGGCATCGCAGAACCTGCAAGAATGCTTACTAC
TGCAACTTGCAACCTTCCCAGAAGACACGCCTTGGCTTGCGGAAGCCAAAATGATTCTTGCCGATCACATCGATCACCTT
GGTAATCGCGATTACAAACTGGTCATCAAAGAAACTAAGCTAAAAGAAGCGGATCTACGCGAAGTATTAAAACTGATCCA
ACAGTTAGATCCTCGTCCGGGCAGCCGCATTACCCCAGACGACACAGAATACGTCATTCCGGACGTATCGGTATTTAAAG
ATCATGGGAAATGGACCGTTTCCATCAACCCTGACAGCATTCCAAAGTTAAAAGTTAACCAACAATACGCTCAATTAGGC
AAAGGCAACAGTGCGGATAGCCAGTACATTCGCAGCAATTTGCAAGAGGCAAAATGGTTAATTAAGAGCTTAGAGAGCAG
AAACGAGACGCTACTCAAAGTTGCAAGATGTATTGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAGAAGCCATGA
AGCCAATGGTACTCAATGATGTAGCCTTGGCGGTGGACATGCATGAATCCACAATATCTCGTGTTACGACACAAAAGTTC
ATGCATACGCCACGTGGCATTTTTGAATTGAAGTACTTCTTCTCCAGCCACGTCAGTACAGACAATGGCGGAGAATGTTC
GTCAACAGCAATCCGTGCACTCATTAAGAAACTGGTCGCGGCAGAGAATACTGCTAAACCACTTAGTGACAGTAAGATTG
CTGCTCTTCTGGCTGACCAAGGGATTCAGGTCGCAAGACGTACGATAGCTAAATATCGAGAATCCTTGGGTATTGCCCCT
TCAAGTCAGCGTAAACGCCTACTTTAA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(328-486)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.246

100

0.457