Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P3T93_RS04375 Genome accession   NZ_CP119997
Coordinates   896305..897021 (-) Length   238 a.a.
NCBI ID   WP_019469554.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 891305..902021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS04355 (P3T93_04355) - 891538..892623 (+) 1086 WP_323701941.1 YeeE/YedE family protein -
  P3T93_RS04360 (P3T93_04360) - 892649..892873 (+) 225 WP_019469551.1 sulfurtransferase TusA family protein -
  P3T93_RS04365 (P3T93_04365) - 893667..895148 (+) 1482 WP_019469552.1 sucrose-6-phosphate hydrolase -
  P3T93_RS04370 (P3T93_04370) - 895149..896114 (+) 966 WP_064264470.1 carbohydrate kinase -
  P3T93_RS04375 (P3T93_04375) agrA 896305..897021 (-) 717 WP_019469554.1 quorum-sensing response regulator AgrA Regulator
  P3T93_RS04380 (P3T93_04380) agrC 897034..898329 (-) 1296 WP_064264469.1 quorum-sensing sensor histidine kinase AgrC -
  P3T93_RS04385 (P3T93_04385) agrD 898360..898497 (-) 138 WP_064264468.1 cyclic lactone autoinducer peptide AgrD -
  P3T93_RS04390 (P3T93_04390) - 898500..899069 (-) 570 WP_064264467.1 accessory gene regulator AgrB -
  P3T93_RS04395 (P3T93_04395) - 899808..900593 (-) 786 WP_064264466.1 carbon-nitrogen family hydrolase -
  P3T93_RS04400 (P3T93_04400) - 900822..901451 (-) 630 WP_107505336.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27995.81 Da        Isoelectric Point: 4.8826

>NTDB_id=801420 P3T93_RS04375 WP_019469554.1 896305..897021(-) (agrA) [Staphylococcus cohnii strain Dog166]
MKIFICEDDVRQRENIVSIINNYIMIEEKPMEIEVATSDPYEVLERAKELKDIGCYFLDIQLEADINGIKLASEIRKYDP
VSNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSETRLKLLSKENTVETIELKRGSNSIYVQYDDVM
FFESSSNSHRLIAHLDNRQIEFYGNLKEIDNLDERFFRCHNSFVVNRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=801420 P3T93_RS04375 WP_019469554.1 896305..897021(-) (agrA) [Staphylococcus cohnii strain Dog166]
ATGAAAATATTCATTTGTGAAGATGATGTAAGACAACGTGAAAATATAGTTTCAATTATCAATAATTACATCATGATAGA
AGAAAAGCCAATGGAAATTGAAGTAGCTACGTCAGATCCTTATGAGGTATTGGAACGTGCAAAAGAACTTAAGGATATTG
GTTGTTATTTTCTTGATATACAATTAGAAGCTGATATTAATGGCATTAAATTAGCAAGTGAGATTAGAAAATACGATCCA
GTGAGCAATATTATATTTGTCACAAGTCACAGTGAGCTCACTTATTTAACTTTTGTATATAAAGTTGCTGCTATGGATTT
TATTTTCAAAGATGATCCTGATGAATTAAAATCAAGAGTAATTGATTGTCTCGAAACATCAGAAACTCGATTGAAGCTAC
TTTCAAAAGAAAACACAGTTGAAACAATCGAGCTCAAACGTGGCAGTAATTCTATTTATGTACAATATGATGATGTAATG
TTTTTTGAATCTTCTTCGAATTCACATCGTTTGATTGCTCATCTAGACAATAGGCAAATTGAATTTTATGGTAATTTAAA
AGAAATCGATAATTTAGATGAACGATTTTTTAGATGTCATAATAGTTTTGTTGTTAATAGACACAATATAGAATCCATTG
ATTCTAAGTCTCGTATTGTTTACTTCAAAAATAATGAACACTGCTACGCGTCCGTACGTAATGTCAAAAAAATTTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.454

100

0.845