Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RHS39_RS06965 Genome accession   NZ_CP133900
Coordinates   1504066..1505046 (-) Length   326 a.a.
NCBI ID   WP_025510275.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499066..1510046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS06955 (RHS39_06955) - 1499564..1502008 (+) 2445 WP_025789239.1 collagenase -
  RHS39_RS06960 (RHS39_06960) - 1502260..1504056 (-) 1797 WP_025789240.1 aminopeptidase P family protein -
  RHS39_RS06965 (RHS39_06965) amiE 1504066..1505046 (-) 981 WP_025510275.1 ABC transporter ATP-binding protein Regulator
  RHS39_RS06970 (RHS39_06970) - 1505056..1506039 (-) 984 WP_023623929.1 ABC transporter ATP-binding protein -
  RHS39_RS06975 (RHS39_06975) - 1506050..1506982 (-) 933 WP_025789241.1 ABC transporter permease subunit -
  RHS39_RS06980 (RHS39_06980) oppB 1506992..1507912 (-) 921 WP_025789242.1 oligopeptide ABC transporter permease OppB -
  RHS39_RS06985 (RHS39_06985) - 1508079..1509689 (-) 1611 WP_025789243.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36392.18 Da        Isoelectric Point: 8.3113

>NTDB_id=801404 RHS39_RS06965 WP_025510275.1 1504066..1505046(-) (amiE) [Vibrio parahaemolyticus strain TW01]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGVVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=801404 RHS39_RS06965 WP_025510275.1 1504066..1505046(-) (amiE) [Vibrio parahaemolyticus strain TW01]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGACCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCGTTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGATTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCACGCGCATTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGTCATATCAGCGACCGAGTAATGGTGATGTACCTTGGCAAACCGATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCTGTAAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(35-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.019

96.012

0.365