Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RHS38_RS09390 Genome accession   NZ_CP133891
Coordinates   1992348..1993328 (+) Length   326 a.a.
NCBI ID   WP_025546786.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1987348..1998328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS09370 (RHS38_09370) - 1987705..1989315 (+) 1611 WP_085610099.1 peptide ABC transporter substrate-binding protein -
  RHS38_RS09375 (RHS38_09375) oppB 1989482..1990402 (+) 921 WP_017448601.1 oligopeptide ABC transporter permease OppB -
  RHS38_RS09380 (RHS38_09380) - 1990412..1991344 (+) 933 WP_085610098.1 ABC transporter permease subunit -
  RHS38_RS09385 (RHS38_09385) - 1991355..1992338 (+) 984 WP_057619315.1 ABC transporter ATP-binding protein -
  RHS38_RS09390 (RHS38_09390) amiE 1992348..1993328 (+) 981 WP_025546786.1 ABC transporter ATP-binding protein Regulator
  RHS38_RS09395 (RHS38_09395) - 1993338..1995134 (+) 1797 WP_025546784.1 aminopeptidase P family protein -
  RHS38_RS09400 (RHS38_09400) - 1995383..1997827 (-) 2445 WP_057619314.1 collagenase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36387.16 Da        Isoelectric Point: 8.1215

>NTDB_id=801328 RHS38_RS09390 WP_025546786.1 1992348..1993328(+) (amiE) [Vibrio parahaemolyticus strain M0904]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKHAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=801328 RHS38_RS09390 WP_025546786.1 1992348..1993328(+) (amiE) [Vibrio parahaemolyticus strain M0904]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACACGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
TGCATTGGATGTATCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCACATGACCTGAGCGTTGTGCGTCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAGGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCTCGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGACAGCAAAGCCCTGTAAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

44.404

84.969

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368