Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RHS38_RS08720 Genome accession   NZ_CP133891
Coordinates   1817625..1819169 (+) Length   514 a.a.
NCBI ID   WP_085609689.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1812625..1824169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS08695 (RHS38_08695) - 1812926..1813246 (+) 321 WP_005454817.1 STAS domain-containing protein -
  RHS38_RS08700 (RHS38_08700) - 1813273..1814175 (+) 903 WP_025545538.1 OmpA family protein -
  RHS38_RS08705 (RHS38_08705) - 1814208..1816274 (+) 2067 WP_227746290.1 SLBB domain-containing protein -
  RHS38_RS08710 (RHS38_08710) - 1816274..1816960 (+) 687 WP_025545541.1 CpsD/CapB family tyrosine-protein kinase -
  RHS38_RS08715 (RHS38_08715) - 1816973..1817353 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  RHS38_RS08720 (RHS38_08720) luxO 1817625..1819169 (+) 1545 WP_085609689.1 sigma-54 dependent transcriptional regulator Regulator
  RHS38_RS08725 (RHS38_08725) - 1819144..1820214 (+) 1071 WP_053321388.1 glycosyltransferase family 4 protein -
  RHS38_RS08730 (RHS38_08730) - 1820365..1821549 (+) 1185 WP_025545546.1 glycosyltransferase -
  RHS38_RS08735 (RHS38_08735) - 1821560..1822732 (+) 1173 WP_031852631.1 glycosyltransferase family 4 protein -
  RHS38_RS08740 (RHS38_08740) - 1822725..1824155 (+) 1431 WP_191786256.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57506.37 Da        Isoelectric Point: 5.8574

>NTDB_id=801326 RHS38_RS08720 WP_085609689.1 1817625..1819169(+) (luxO) [Vibrio parahaemolyticus strain M0904]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTETQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=801326 RHS38_RS08720 WP_085609689.1 1817625..1819169(+) (luxO) [Vibrio parahaemolyticus strain M0904]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGAAGCAATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTAGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTCAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGAGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGTGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGCTAGCCAAGCATTTTCTCACAACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAACGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

48.898

97.082

0.475