Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RHS38_RS00250 Genome accession   NZ_CP133891
Coordinates   54688..56523 (+) Length   611 a.a.
NCBI ID   WP_085609574.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49688..61523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS00230 (RHS38_00230) ggt 50105..51865 (-) 1761 WP_069530119.1 gamma-glutamyltransferase -
  RHS38_RS00235 (RHS38_00235) - 51976..52635 (-) 660 WP_017449526.1 LysE family translocator -
  RHS38_RS00240 (RHS38_00240) - 52727..53524 (-) 798 WP_005458575.1 AraC family transcriptional regulator -
  RHS38_RS00245 (RHS38_00245) rarD 53599..54513 (-) 915 WP_005497386.1 EamA family transporter RarD -
  RHS38_RS00250 (RHS38_00250) recQ 54688..56523 (+) 1836 WP_085609574.1 ATP-dependent DNA helicase RecQ Machinery gene
  RHS38_RS00255 (RHS38_00255) - 56533..56838 (+) 306 WP_005458579.1 DUF3630 family protein -
  RHS38_RS00260 (RHS38_00260) - 57132..57800 (+) 669 WP_005480953.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  RHS38_RS00265 (RHS38_00265) gppA 57998..59491 (-) 1494 WP_005480964.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  RHS38_RS00270 (RHS38_00270) rhlB 59511..60824 (-) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  RHS38_RS00275 (RHS38_00275) trxA 60936..61262 (+) 327 WP_005458583.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69280.19 Da        Isoelectric Point: 6.9137

>NTDB_id=801281 RHS38_RS00250 WP_085609574.1 54688..56523(+) (recQ) [Vibrio parahaemolyticus strain M0904]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLHAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTTARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=801281 RHS38_RS00250 WP_085609574.1 54688..56523(+) (recQ) [Vibrio parahaemolyticus strain M0904]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCGGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGCTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAAGCCAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGCCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTGCCTTTGGCGATGATTGCGGTGGATGAAGCACACTGTATCTCGCAATGGGGACACGAT
TTCCGTCCCGAATACGCCGCGCTAGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTACCTGCTGAAGCGATGATGTTGTACGACCCCGCAGA
CATCAGTTGGCTACGCCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTCATGCGA
TGAGTGCCTTTGCAGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTACTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGTATTGGCCGCGATCACAGTCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAACTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACTACAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCCGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

DEAD/DEAH box helicase (DEAD)

(31-189)

RQC domain (RQC)

(409-517)

Helicase conserved C-terminal domain (Helicase_C)

(228-333)

HRDC domain (HRDC)

(537-603)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393