NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	P3G59_RS25055	Genome accession	NZ_CP119967
Coordinates	5606090..5607457 (-)	Length	455 a.a.
NCBI ID	WP_007909773.1	Uniprot ID	J2YZH4
Organism	Pseudomonas sp. A34-9
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5601090..5612457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3G59_RS25030	-	5601228..5601938 (+)	711	WP_277759367.1	GntR family transcriptional regulator	-
P3G59_RS25035	yjiA	5602037..5603008 (-)	972	WP_277759368.1	GTPase	-
P3G59_RS25040	-	5603172..5603369 (-)	198	WP_003228401.1	YbdD/YjiX family protein	-
P3G59_RS25045	-	5603385..5605451 (-)	2067	WP_242206996.1	carbon starvation CstA family protein	-
P3G59_RS25050	-	5605612..5605980 (+)	369	WP_277759369.1	PilZ domain-containing protein	-
P3G59_RS25055	radA	5606090..5607457 (-)	1368	WP_007909773.1	DNA repair protein RadA	Machinery gene
P3G59_RS25060	-	5607503..5608048 (-)	546	WP_277759370.1	ankyrin repeat domain-containing protein	-
P3G59_RS25065	katB	5608108..5609649 (-)	1542	WP_277759371.1	catalase KatB	-
P3G59_RS25070	mscL	5609936..5610349 (+)	414	WP_007909770.1	large-conductance mechanosensitive channel protein MscL	-
P3G59_RS25075	-	5610396..5611172 (-)	777	WP_277759372.1	ferredoxin--NADP reductase	-
P3G59_RS25080	-	5611474..5612187 (+)	714	WP_277759373.1	autoinducer binding domain-containing protein	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48773.25 Da Isoelectric Point: 6.8987

                                >NTDB_id=801258 P3G59_RS25055 WP_007909773.1 5606090..5607457(-) (radA) [Pseudomonas sp. A34-9]

MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=801258 P3G59_RS25055 WP_007909773.1 5606090..5607457(-) (radA) [Pseudomonas sp. A34-9]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGCGGTGAGTG

CGGTGCCTGGAACACCCTGACCGAGACCATGATCGAAAGCGGTGGCGCCACGGCACCGACCGGCCGCACCGGCTGGGCCG

GGCAGCAGGCTCAGATAAAGACACTGGCCGAAGTCAGCATCGAAGAGATTCCGCGCTTCTCCACCGCTTCGGGTGAGCTG

GATCGCGTACTCGGCGGGGGGCTGGTCGATGGCTCGGTGGTCCTGATCGGTGGTGATCCGGGGATCGGCAAATCGACGAT

CCTGTTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCAGCGCTTTACGTCACCGGTGAAGAATCCCAACAGCAAGTAG

CCATGCGCGCGCGCCGCCTCGGCTTGCCGCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC

ACGGCCCGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAGTTGCAATCGGCACC

CGGTGGCGTCTCTCAGGTGCGGGAAAGTGCAGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATTTTCCTCG

TCGGCCACGTCACCAAGGAAGGCGCGCTGGCCGGCCCCCGCGTGCTCGAACACATGGTCGACACCGTGCTTTATTTCGAA

GGCGAGTCCGATGGACGTCTGCGTTTGTTGCGTGCGGTGAAAAACCGTTTCGGTGCGGTCAACGAGTTGGGTGTTTTTGG

CATGACCGACAAGGGTTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACTCGCGCGCAGGAAGAAGTACCGGGCA

GTGTGGTCATGGCGACATGGGAAGGCACCCGCCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGCCATCTGGCC

AACCCGCGACGGGTGACGTTGGGCCTGGATCAGAACCGTTTGGCGATGTTGCTCGCGGTTTTGCATCGCCACGGTGGAAT

TCCGACTCACGATCAGGATGTGTTCCTCAATGTGGTCGGTGGGGTGAAGGTGCTGGAGACGGCGTCTGACCTGGCGCTGA

TGGCGGCGGTCATGTCGAGTTTGCGCAATCGACCGTTGCCGCATGATCTGCTGGTGTTTGGCGAGGTCGGATTGTCTGGA

GAAGTTCGCCCCGTGCCAAGCGGTCAGGAGCGTTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCGATCGTGCCCAA

AGGCAATGCGCCAAAGGAATCCCCGCCAGGCTTGCAGATCATCGCCGTCACCCGCCTCGAACAGGCCCTCGACGCCCTTT

TTGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.453	100	0.497
radA	Streptococcus mitis SK321	46.491	100	0.466
radA	Streptococcus mitis NCTC 12261	46.272	100	0.464
radA	Streptococcus pneumoniae Rx1	46.272	100	0.464
radA	Streptococcus pneumoniae D39	46.272	100	0.464
radA	Streptococcus pneumoniae R6	46.272	100	0.464
radA	Streptococcus pneumoniae TIGR4	46.272	100	0.464

Detailed information NTG0801258