Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3F89_RS27010 Genome accession   NZ_CP119875
Coordinates   5223499..5223783 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus tropicus strain T36S-23     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5218499..5228783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS26995 (P3F89_26955) rnmV 5219290..5219847 (-) 558 WP_000692830.1 ribonuclease M5 -
  P3F89_RS27000 (P3F89_26960) - 5220065..5220832 (-) 768 WP_098358175.1 TatD family hydrolase -
  P3F89_RS27005 (P3F89_26965) metG 5220999..5222981 (-) 1983 WP_098358176.1 methionine--tRNA ligase -
  P3F89_RS27010 (P3F89_26970) abrB 5223499..5223783 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P3F89_RS27015 (P3F89_26975) rsmI 5223804..5224679 (-) 876 WP_001980843.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P3F89_RS27020 (P3F89_26980) - 5224648..5224938 (-) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  P3F89_RS27025 (P3F89_26985) - 5224925..5225665 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P3F89_RS27030 (P3F89_26990) yabA 5225939..5226289 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  P3F89_RS27035 (P3F89_26995) - 5226304..5227131 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  P3F89_RS27040 (P3F89_27000) holB 5227137..5228120 (-) 984 WP_000978580.1 DNA polymerase III subunit delta' -
  P3F89_RS27045 (P3F89_27005) tmk 5228156..5228782 (-) 627 WP_098358177.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=801236 P3F89_RS27010 WP_000843036.1 5223499..5223783(+) (abrB) [Bacillus tropicus strain T36S-23]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=801236 P3F89_RS27010 WP_000843036.1 5223499..5223783(+) (abrB) [Bacillus tropicus strain T36S-23]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851