Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RH217_RS09800 Genome accession   NZ_CP133871
Coordinates   1925356..1925985 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   -
Organism   Escherichia coli strain ES5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1920356..1930985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RH217_RS09780 (RH217_09780) ycbZ 1920757..1922517 (-) 1761 WP_263943536.1 Lon protease family protein -
  RH217_RS09785 (RH217_09785) matP 1922703..1923155 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  RH217_RS09790 (RH217_09790) ompA 1923231..1924271 (-) 1041 WP_023307840.1 porin OmpA -
  RH217_RS09795 (RH217_09795) sulA 1924628..1925137 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  RH217_RS09800 (RH217_09800) sxy/tfoX 1925356..1925985 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RH217_RS09805 (RH217_09805) yccS 1925948..1928110 (-) 2163 WP_000323868.1 YccS family putative transporter -
  RH217_RS09810 (RH217_09810) yccF 1928120..1928566 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RH217_RS09815 (RH217_09815) helD 1928689..1930743 (+) 2055 WP_086217534.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=801233 RH217_RS09800 WP_001612760.1 1925356..1925985(+) (sxy/tfoX) [Escherichia coli strain ES5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=801233 RH217_RS09800 WP_001612760.1 1925356..1925985(+) (sxy/tfoX) [Escherichia coli strain ES5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995