Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P3F89_RS20630 Genome accession   NZ_CP119875
Coordinates   3979797..3980120 (+) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus tropicus strain T36S-23     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3974797..3985120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS20615 (P3F89_20580) - 3975312..3976679 (-) 1368 WP_001973064.1 aldehyde dehydrogenase -
  P3F89_RS20620 (P3F89_20585) inhA1 3976852..3979239 (-) 2388 WP_001035938.1 M6 family metalloprotease immune inhibitor InhA1 -
  P3F89_RS20625 (P3F89_20590) - 3979583..3979717 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  P3F89_RS20630 (P3F89_20595) sinR 3979797..3980120 (+) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  P3F89_RS20635 (P3F89_20600) calY 3980197..3980790 (-) 594 WP_033691696.1 biofilm matrix protein CalY -
  P3F89_RS20640 (P3F89_20605) - 3981221..3982060 (-) 840 WP_085782313.1 DUF4047 domain-containing protein -
  P3F89_RS20645 (P3F89_20610) - 3982222..3982809 (-) 588 WP_000172849.1 CalY family protein -
  P3F89_RS20650 (P3F89_20615) sipW 3982870..3983439 (-) 570 WP_001973051.1 signal peptidase I SipW -
  P3F89_RS20655 (P3F89_20620) - 3983632..3984918 (-) 1287 WP_309573702.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=801220 P3F89_RS20630 WP_000578880.1 3979797..3980120(+) (sinR) [Bacillus tropicus strain T36S-23]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=801220 P3F89_RS20630 WP_000578880.1 3979797..3980120(+) (sinR) [Bacillus tropicus strain T36S-23]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterProScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692