Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P3F89_RS17280 Genome accession   NZ_CP119875
Coordinates   3329216..3329503 (-) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus tropicus strain T36S-23     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3324216..3334503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS17260 (P3F89_17230) - 3324841..3325776 (-) 936 WP_001973847.1 aldo/keto reductase -
  P3F89_RS17265 (P3F89_17235) - 3325885..3326193 (+) 309 WP_001973844.1 helix-turn-helix transcriptional regulator -
  P3F89_RS17270 (P3F89_17240) galT 3326304..3327794 (-) 1491 WP_001973841.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  P3F89_RS17275 (P3F89_17245) - 3327992..3328942 (-) 951 WP_001973839.1 serine protease -
  P3F89_RS17280 (P3F89_17250) abrB 3329216..3329503 (-) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P3F89_RS17285 (P3F89_17255) - 3329619..3331499 (-) 1881 WP_001973823.1 ABC transporter permease -
  P3F89_RS17290 (P3F89_17260) nadE 3331771..3332589 (+) 819 WP_000174890.1 ammonia-dependent NAD(+) synthetase -
  P3F89_RS17295 (P3F89_17265) - 3332635..3333096 (-) 462 WP_000024988.1 NUDIX hydrolase -
  P3F89_RS17300 (P3F89_17270) - 3333120..3333317 (-) 198 WP_001048099.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=801216 P3F89_RS17280 WP_000648331.1 3329216..3329503(-) (abrB) [Bacillus tropicus strain T36S-23]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=801216 P3F89_RS17280 WP_000648331.1 3329216..3329503(-) (abrB) [Bacillus tropicus strain T36S-23]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516