Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P3F89_RS06120 Genome accession   NZ_CP119875
Coordinates   1180363..1181406 (+) Length   347 a.a.
NCBI ID   WP_061658329.1    Uniprot ID   -
Organism   Bacillus tropicus strain T36S-23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1175363..1186406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS06085 (P3F89_06080) - 1175619..1175993 (+) 375 WP_042514685.1 nucleoside 2-deoxyribosyltransferase -
  P3F89_RS06090 (P3F89_06085) - 1176073..1176561 (+) 489 WP_000764271.1 hypothetical protein -
  P3F89_RS06095 (P3F89_06090) - 1176598..1176909 (-) 312 WP_001093243.1 hypothetical protein -
  P3F89_RS06100 (P3F89_06095) - 1177162..1177377 (+) 216 WP_001008328.1 DUF3912 family protein -
  P3F89_RS06105 (P3F89_06100) - 1177593..1178987 (-) 1395 WP_001094339.1 L-cystine transporter -
  P3F89_RS06110 (P3F89_06105) - 1179095..1179337 (-) 243 WP_000440717.1 DUF2626 domain-containing protein -
  P3F89_RS06115 (P3F89_06110) - 1179463..1180158 (-) 696 WP_002194514.1 metalloregulator ArsR/SmtB family transcription factor -
  P3F89_RS06120 (P3F89_06115) comGA 1180363..1181406 (+) 1044 WP_061658329.1 competence protein ComGA Machinery gene
  P3F89_RS06125 (P3F89_06120) comGB 1181399..1182430 (+) 1032 WP_002194510.1 comG operon protein ComGB -
  P3F89_RS06130 (P3F89_06125) comGC 1182442..1182741 (+) 300 WP_002194509.1 comG operon protein ComGC -
  P3F89_RS06135 (P3F89_06130) comGD 1182738..1183193 (+) 456 WP_002194508.1 comG operon protein ComGD -
  P3F89_RS06140 (P3F89_06135) comGE 1183186..1183488 (+) 303 WP_000829522.1 competence type IV pilus minor pilin ComGE -
  P3F89_RS06145 (P3F89_06140) comGF 1183458..1183928 (+) 471 WP_033692249.1 competence type IV pilus minor pilin ComGF -
  P3F89_RS06150 (P3F89_06145) comGG 1183925..1184296 (+) 372 WP_002194506.1 competence type IV pilus minor pilin ComGG -
  P3F89_RS06155 (P3F89_06150) - 1184472..1185122 (+) 651 WP_000183845.1 2OG-Fe(II) oxygenase -
  P3F89_RS06160 (P3F89_06155) aroK 1185241..1185738 (+) 498 WP_002194505.1 shikimate kinase AroK -
  P3F89_RS06165 (P3F89_06160) - 1185777..1185977 (+) 201 WP_000106081.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39150.58 Da        Isoelectric Point: 9.0895

>NTDB_id=801205 P3F89_RS06120 WP_061658329.1 1180363..1181406(+) (comGA) [Bacillus tropicus strain T36S-23]
MNGIESFANTILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRSDDLLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFIDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRQVRQASIYELLYGYELKQAIKGANGEC
VTSKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=801205 P3F89_RS06120 WP_061658329.1 1180363..1181406(+) (comGA) [Bacillus tropicus strain T36S-23]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGACAGAAGGATGTAGTGGTTCAACTGCGTATAGGAAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCCACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAGGATCCAGTTGAAAAAAGAAGTGATGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACAAATGATGCGAGAGGGGCGATACTCAGGTTCATAGATTTTGGCATAACGAGGCAAGAGATTGAACAATCTTTATTAGC
TATAGCTGCACAGAGACTTGTCGAATTAAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAATTAAAACAAGCGATTAAAGGAGCAAACGGGGAATGT
GTCACATCCAAGCATGAAACGTTAGAATCTTCGATAAGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.061

100

0.571