Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P3F89_RS05855 Genome accession   NZ_CP119875
Coordinates   1128400..1129146 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus tropicus strain T36S-23     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1123400..1134146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS05825 (P3F89_05820) - 1123689..1125833 (+) 2145 WP_002194559.1 HD family phosphohydrolase -
  P3F89_RS05830 (P3F89_05825) ybeY 1125830..1126300 (+) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  P3F89_RS05835 (P3F89_05830) - 1126297..1126650 (+) 354 WP_000715478.1 diacylglycerol kinase family protein -
  P3F89_RS05840 (P3F89_05835) - 1126750..1127148 (+) 399 WP_001086294.1 cytidine deaminase -
  P3F89_RS05845 (P3F89_05840) era 1127141..1128046 (+) 906 WP_001080242.1 GTPase Era -
  P3F89_RS05850 (P3F89_05845) - 1128223..1128366 (+) 144 WP_000883924.1 YqzL family protein -
  P3F89_RS05855 (P3F89_05850) recO 1128400..1129146 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  P3F89_RS05860 (P3F89_05855) - 1129254..1129886 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  P3F89_RS05865 (P3F89_05860) - 1129916..1130728 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  P3F89_RS05870 (P3F89_05865) - 1131096..1131227 (+) 132 WP_002022404.1 hypothetical protein -
  P3F89_RS05875 (P3F89_05870) dnaG 1131581..1133377 (+) 1797 WP_000528216.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=801204 P3F89_RS05855 WP_000487010.1 1128400..1129146(+) (recO) [Bacillus tropicus strain T36S-23]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=801204 P3F89_RS05855 WP_000487010.1 1128400..1129146(+) (recO) [Bacillus tropicus strain T36S-23]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAGTTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552