Detailed information NTG0801194

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: P3F89_RS01485
• Genome accession: NZ_CP119875
• Coordinates: 315541..316890 (+)
• Length: 449 a.a.
• NCBI ID: WP_309573801.1
• Uniprot ID: -
• Organism: Bacillus tropicus strain T36S-23
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 310541..321890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3F89_RS01465 (P3F89_01465)	-	311643..312278 (-)	636	WP_000926682.1	YigZ family protein	-
P3F89_RS01470 (P3F89_01470)	-	312518..313360 (+)	843	WP_000844763.1	DegV family protein	-
P3F89_RS01475 (P3F89_01475)	-	313534..313848 (+)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
P3F89_RS01480 (P3F89_01480)	-	313995..315413 (+)	1419	WP_042515881.1	NlpC/P60 family protein	-
P3F89_RS01485 (P3F89_01485)	comFA	315541..316890 (+)	1350	WP_309573801.1	ATP-dependent helicase ComFA	Machinery gene
P3F89_RS01490 (P3F89_01490)	-	316890..317594 (+)	705	WP_001975266.1	ComF family protein	-
P3F89_RS01495 (P3F89_01495)	cspC	317721..317918 (+)	198	WP_001990088.1	cold shock protein CspC	-
P3F89_RS01500 (P3F89_01500)	hpf	318244..318786 (+)	543	WP_000671191.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
P3F89_RS01505 (P3F89_01505)	secA	319060..321567 (+)	2508	WP_042514518.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51104.53 Da
• Isoelectric Point: 9.0653

>NTDB_id=801194 P3F89_RS01485 WP_309573801.1 315541..316890(+) (comFA) [Bacillus tropicus strain T36S-23]
MFAGKQLLLEEISSDLRRELSDLKEKGEIVCVQGVIKRDSKYICQRCGNIEQRLFASFLCKRCGKACMYCRNCITMGRVS
ECTVLVRGIHERKGERELNSLQWEGALATGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVMELAPRLQEVFPSINVAALYGGSVDHEKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPHVLLQWLKMNLNKKYPIFL
FVPHVRYIEDVSLLLKGLDNRIDGVHAEDPMRKEKVTSFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEVFSESALV
QIAGRAGRSFEEPCGEVMYFHYGKTEAMVRAKKHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=801194 P3F89_RS01485 WP_309573801.1 315541..316890(+) (comFA) [Bacillus tropicus strain T36S-23]
ATGTTTGCTGGGAAACAGTTGCTATTAGAAGAAATATCTTCAGACTTAAGGAGAGAATTAAGTGATTTAAAAGAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAATAAAGAGGGATTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTTTTATGTAAAAGATGCGGTAAAGCATGCATGTATTGCCGGAATTGTATAACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGAGGGATTCATGAAAGAAAAGGAGAAAGGGAATTAAATTCGTTACAGTGGGAAGGTGCATT
GGCTACTGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GTGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTTTGTATCGCAACA
CCAAGAACGGACGTTGTAATGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAAGGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAAGAGGGAAACAAAA
AGGTATCATTGTTTCGGGAAGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCACGTATTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGATGTGAGTCTGTTATTGAAAGGATTGGATAATCGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGACATCCTTCAGAAAGGGAGACATTCCGCTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCGGAAGAAGAAGTTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTGTGGCGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
GATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTGATTGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

• Type III restriction enzyme, res subunit (ResIII) (107-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.922	96.659	0.492
comFA	Latilactobacillus sakei subsp. sakei 23K	41.235	90.2	0.372