Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P3F88_RS16550 Genome accession   NZ_CP119873
Coordinates   3702650..3703810 (+) Length   386 a.a.
NCBI ID   WP_309583799.1    Uniprot ID   -
Organism   Paraburkholderia phenoliruptrix strain T36S-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3697650..3708810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F88_RS16520 (P3F88_16525) - 3698240..3698857 (+) 618 WP_013587039.1 50S ribosomal protein L25/general stress protein Ctc -
  P3F88_RS16525 (P3F88_16530) pth 3699008..3699610 (+) 603 WP_013337949.1 aminoacyl-tRNA hydrolase -
  P3F88_RS16530 (P3F88_16535) hisC 3699678..3700757 (+) 1080 WP_309583798.1 histidinol-phosphate transaminase -
  P3F88_RS16535 (P3F88_16540) - 3700832..3701089 (-) 258 WP_013337947.1 YfhL family 4Fe-4S dicluster ferredoxin -
  P3F88_RS16540 (P3F88_16545) coaD 3701153..3701668 (-) 516 WP_013337946.1 pantetheine-phosphate adenylyltransferase -
  P3F88_RS16545 (P3F88_16550) rsmD 3701781..3702395 (-) 615 WP_013587037.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P3F88_RS16550 (P3F88_16555) pilA 3702650..3703810 (+) 1161 WP_309583799.1 signal recognition particle-docking protein FtsY Machinery gene
  P3F88_RS16555 (P3F88_16560) maiA 3703917..3704561 (-) 645 WP_028361620.1 maleylacetoacetate isomerase -
  P3F88_RS16560 (P3F88_16565) - 3704587..3705285 (-) 699 WP_013587034.1 fumarylacetoacetate hydrolase family protein -
  P3F88_RS16565 (P3F88_16570) ybiB 3705511..3706482 (+) 972 WP_013587033.1 DNA-binding protein YbiB -
  P3F88_RS16570 (P3F88_16575) - 3706485..3706868 (-) 384 WP_015001540.1 nuclear transport factor 2 family protein -
  P3F88_RS16575 (P3F88_16580) - 3706909..3707472 (-) 564 WP_028361616.1 acyloxyacyl hydrolase -
  P3F88_RS16580 (P3F88_16585) rpoH 3707836..3708771 (+) 936 WP_013587030.1 RNA polymerase sigma factor RpoH -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 41282.14 Da        Isoelectric Point: 4.6384

>NTDB_id=801187 P3F88_RS16550 WP_309583799.1 3702650..3703810(+) (pilA) [Paraburkholderia phenoliruptrix strain T36S-14]
MFSFFKRFKGSKESENAPDESPTAADEFVDESTAVETPAEPPAEVAPQAAPSLAPQFAPEAEPEKDFEESSLDTVEIVPP
PVQDASAKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLEALREKVRAERLTEPQQVK
AALRALLVDLLKPLEKSLMLGRAKPLVVMIAGVNGAGKTTSIGKLAKHLQSFNQSVLLAAGDTFRAAAREQLAIWGQRNN
VTVVAQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALT
QVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGA

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=801187 P3F88_RS16550 WP_309583799.1 3702650..3703810(+) (pilA) [Paraburkholderia phenoliruptrix strain T36S-14]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGAAAACGCGCCAGACGAGTCGCCAACCGCTGCAGACGA
GTTCGTCGACGAGTCCACGGCGGTAGAAACGCCGGCCGAACCGCCCGCCGAAGTAGCGCCGCAGGCTGCGCCGTCGCTCG
CCCCGCAATTCGCGCCAGAAGCCGAGCCCGAGAAGGATTTCGAAGAATCGTCGCTCGATACCGTGGAAATCGTGCCGCCG
CCGGTGCAGGACGCGAGCGCGAAACGCTCGTGGCTGACTCGTCTGAAGACGGGCTTGTCGAAGACCAGTTCCAGCCTCAC
CGGCATTTTTGTCGGCACGAAGATCGACGAGGATTTGTACGAAGAGCTGGAAACCGCGCTGCTCATGTCCGACGCGGGCG
TCGACGCCACCGAATTCCTGCTCGAGGCTTTGCGCGAGAAAGTGCGCGCCGAGCGTCTCACCGAGCCGCAGCAGGTCAAA
GCGGCGCTGCGCGCTCTGCTGGTCGATCTGTTGAAACCGCTGGAAAAGTCGCTCATGCTCGGGCGCGCCAAGCCGCTCGT
CGTCATGATCGCCGGCGTCAACGGGGCGGGCAAGACGACCAGCATCGGCAAGCTCGCCAAGCATCTGCAGAGCTTTAACC
AGTCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGTTGGCGATCTGGGGTCAGCGCAACAAC
GTGACGGTGGTCGCGCAGGAAAGCGGCGACCCGGCCGCCGTGATTTTCGACGCGGTCGGCGCCGCGCGGGCGCGCAAGAT
CGACGTGATGATGGCGGACACGGCCGGCCGTCTGCCCACGCAGCTGCATCTGATGGAAGAGCTGCGCAAAGTGAAGCGCG
TGATCGGCAAGGCGCAGGACGGCGCGCCGCACGAAGTGCTGCTCGTGATCGACGCCAATACGGGGCAGAACGCGCTCACG
CAGGTCAAGGCTTTCGACGACGCGCTCGGGCTGACGGGGCTGATCGTGACCAAGCTCGACGGCACGGCGAAAGGCGGCAT
TCTTGCGGCCATCGCGCGGCAAAGGCCGATTCCCGTGTATTTCATCGGCGTGGGCGAAAAGGTCGAAGATCTGCAGCCGT
TCAGCGCGGAAGAGTTTTCGGACGCGTTGCTCGGCGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(104-164)

SRP54-type protein, GTPase domain (SRP54)

(186-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.415

100

0.591