Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P3S72_RS26385 Genome accession   NZ_CP119772
Coordinates   5712410..5713777 (-) Length   455 a.a.
NCBI ID   WP_017848272.1    Uniprot ID   A0A1D3K4F8
Organism   Pseudomonas sp. D3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5707410..5718777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S72_RS26365 (P3S72_26360) yjiA 5708450..5709409 (-) 960 WP_276194961.1 GTPase -
  P3S72_RS26370 (P3S72_26365) - 5709559..5709756 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  P3S72_RS26375 (P3S72_26370) - 5709772..5711838 (-) 2067 WP_276194962.1 carbon starvation CstA family protein -
  P3S72_RS26380 (P3S72_26375) - 5712013..5712381 (+) 369 WP_247396566.1 PilZ domain-containing protein -
  P3S72_RS26385 (P3S72_26380) radA 5712410..5713777 (-) 1368 WP_017848272.1 DNA repair protein RadA Machinery gene
  P3S72_RS26390 (P3S72_26385) - 5713813..5714352 (-) 540 WP_276194963.1 ankyrin repeat domain-containing protein -
  P3S72_RS26395 (P3S72_26390) katB 5714428..5715957 (-) 1530 WP_276197998.1 catalase KatB -
  P3S72_RS26400 (P3S72_26395) mscL 5716257..5716673 (+) 417 WP_247396571.1 large-conductance mechanosensitive channel protein MscL -
  P3S72_RS26405 (P3S72_26400) - 5716718..5717494 (-) 777 WP_247396573.1 ferredoxin--NADP reductase -
  P3S72_RS26410 (P3S72_26405) - 5717894..5718604 (+) 711 WP_276194964.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=801119 P3S72_RS26385 WP_017848272.1 5712410..5713777(-) (radA) [Pseudomonas sp. D3]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=801119 P3S72_RS26385 WP_017848272.1 5712410..5713777(-) (radA) [Pseudomonas sp. D3]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGTACCGAGTG
CGGGGCGTGGAACACCCTCACGGAAACCATGATCGAAAGCGGCGGCGCTGCGGCCCCCAGCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAGGTCCCGCGTTTCTCCACTGCCTCCGGTGAACTT
GACCGGGTGCTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTCCTGATCGGCGGCGACCCCGGTATCGGCAAATCGACCAT
CCTGTTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCACGCCGCCTGGGCCTGCCCCAGGACCAGTTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACCGCGCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAACTGCAATCGGCCCC
GGGTGGCGTGTCCCAGGTGCGTGAAAGCGCGGCGCTGTTGGTGCGTTATGCCAAGCAAAGCGGCACGGCGATCTTCCTGG
TCGGTCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGTTTACGCTTGCTGCGGGCCGTGAAGAACCGCTTCGGTGCGGTGAACGAGCTGGGCGTATTCGC
TATGACCGACCGCGGGCTGAAAGAAGTTTCCAACCCCTCGGCGATTTTTCTGACCCGTGCCCAGGAGGAAGTCCCAGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTGGACGACAGCCACTTGGCC
AACCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGTCTGGCGATGCTGCTTGCGGTACTCCACCGCCACGGCGGTAT
CCCGACCCATGATCAGGACGTGTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGTCTGCGCAACCGCCCGCTGCCCCACGACCTGTTGGTGTTCGGCGAAGTCGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGTGGTCAGGAGCGTTTAAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAACGCACCGAAGGAAGCGCCGCCGGGGTTGCAGGTGATTGCGGTGACGCGGCTGGAGCAGGCGTTGGATGCACTTT
TCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3K4F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.957

100

0.475
  radA Streptococcus pneumoniae R6

46.957

100

0.475
  radA Streptococcus pneumoniae TIGR4

46.957

100

0.475
  radA Streptococcus pneumoniae D39

46.957

100

0.475
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47