Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P2W68_RS12670 Genome accession   NZ_CP119767
Coordinates   2798905..2800254 (+) Length   449 a.a.
NCBI ID   WP_065399266.1    Uniprot ID   A0A1B8ZUM4
Organism   Chryseobacterium arthrosphaerae strain FS91703     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2793905..2805254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2W68_RS12655 (P2W68_12655) - 2794978..2795733 (+) 756 WP_276159335.1 SDR family NAD(P)-dependent oxidoreductase -
  P2W68_RS12660 (P2W68_12660) - 2795715..2797016 (+) 1302 WP_276159336.1 phosphatase PAP2 family protein -
  P2W68_RS12665 (P2W68_12665) - 2797021..2798721 (+) 1701 WP_276159337.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  P2W68_RS12670 (P2W68_12670) radA 2798905..2800254 (+) 1350 WP_065399266.1 DNA repair protein RadA Machinery gene
  P2W68_RS12675 (P2W68_12675) - 2800309..2800980 (+) 672 WP_276159338.1 class I SAM-dependent DNA methyltransferase -
  P2W68_RS12680 (P2W68_12680) - 2800977..2801684 (+) 708 WP_276159339.1 VanW family protein -
  P2W68_RS12685 (P2W68_12685) - 2801681..2802274 (+) 594 WP_276159340.1 ACP phosphodiesterase -
  P2W68_RS12690 (P2W68_12690) - 2802271..2802786 (-) 516 WP_276159341.1 DUF6702 family protein -
  P2W68_RS12695 (P2W68_12695) - 2803275..2804921 (+) 1647 WP_276159342.1 T9SS type A sorting domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49972.56 Da        Isoelectric Point: 6.6946

>NTDB_id=801093 P2W68_RS12670 WP_065399266.1 2798905..2800254(+) (radA) [Chryseobacterium arthrosphaerae strain FS91703]
MAKLKTAYFCQNCGTQYPQWMGQCKNCGQWNTLVEEVVEKPSHKTPPFSKSKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIRIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=801093 P2W68_RS12670 WP_065399266.1 2798905..2800254(+) (radA) [Chryseobacterium arthrosphaerae strain FS91703]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACTCAATACCCCCAATGGATGGGACAATGCAAAAACTG
CGGACAATGGAATACACTCGTGGAAGAAGTAGTGGAAAAACCATCCCATAAAACTCCTCCATTTTCAAAAAGCAAGCAAC
ATGTCATCAACATTGTTGAAGTGGAGACCAGTGAGGAACCAAGAATCAAAACTCCTTCTGAGGAACTTAATCGTGTTCTC
GGAGGCGGTATTGTTTTAGGCTCTGTTACGCTGATAGGCGGTGAACCCGGAATTGGAAAATCTACCCTGCTCCTCCAGCT
GGCCCTGAAAATGAAGAAAAAAATATTCTATGTTTCCGGGGAAGAAAGTGCCTCCCAGATCAAGATGAGAGCCGACAGAC
TGACGGATATCCAAAATCCGAACTGTTTTCTCTTTACCGAAACTTCACTGGAAAAAATTCTTCATGAAGCCAAAAAACTG
GAACCGGACTTTATGATCATCGACTCTATCCAGACGCTTCAGTCTCAGCTGATCGAAAGTTCTCCCGGAACCGTTTCCCA
GATCAGAGAATGTTCCAATGAAATTATCAAGTATGCCAAAGAAAACAATACTCCGGTATTTCTGGTAGGCCATATTACCA
AAGACGGGCAGATTGCCGGCCCAAAAGTCCTGGAACATATGGTGGATGTGGTTTTAAATTTTGACGGGGACCGGAATCAC
CTTTTCAGGTTATTGAGGGCGAATAAAAACCGTTTTGGTTCTACTGCCGAAATCGGAATTTATGAAATGGTCTCCCAGGG
TCTGAAAGAGATTAAAAATCCTTCTGAAATTCTTATTACCAAAAAGTTTGAGGAACTGTCCGGAAATTCAGTAGCCGTAA
CCTTAGAGGGAAACCGCCCTATGCTTCTGGAAATCCAGGCCTTGGTGAGTACAGCGGTTTATGGTACTCCTCAGAGAAGC
TCTACCGGTTTTGATTCCAAGAGATTAAATATGCTTCTGGCAGTGCTTGAAAAAAGAGCAGGCTTTCAACTGGGTGCTAA
AGATGTCTTTCTCAACATCACCGGTGGAATAAAAACAGATGATCCGGCACTGGATCTGGCGGTTATTGCTTCAGTACTTT
CATCCAATGAAGATATTGCCATTTCCGAACATTATTGTTTTGCCGGAGAGATCGGACTGAGTGGAGAAATACGTCCGGTT
GCCCAGATTGAACAGAGAATCACCGAAGCTGAAAAGTTGGGATATGAAAAGATATTTGTGTCCAACCTTAATAAAATTCC
GAAGAGAAAATTTGGAATCAGGATTGAAGAGGTAAGTAAAATTGAAGATTTCCATGAAAGGCTTTTCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

AAA domain (AAA_25)

(64-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8ZUM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.499
  radA Streptococcus pneumoniae Rx1

48.246

100

0.49
  radA Streptococcus pneumoniae D39

48.246

100

0.49
  radA Streptococcus pneumoniae R6

48.246

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.49
  radA Streptococcus mitis NCTC 12261

48.246

100

0.49
  radA Streptococcus mitis SK321

50.118

94.209

0.472