Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RDJ20_RS02705 Genome accession   NZ_CP133755
Coordinates   599655..600380 (-) Length   241 a.a.
NCBI ID   WP_121358352.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BJ86     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594655..605380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS02680 (RDJ20_02680) - 595123..595638 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  RDJ20_RS02685 (RDJ20_02685) rarD 596328..597224 (-) 897 WP_033971423.1 EamA family transporter RarD -
  RDJ20_RS02690 (RDJ20_02690) - 597431..598405 (-) 975 WP_058018283.1 serine/threonine protein kinase -
  RDJ20_RS02695 (RDJ20_02695) - 598467..599225 (-) 759 WP_033971425.1 TOBE domain-containing protein -
  RDJ20_RS02700 (RDJ20_02700) - 599293..599613 (-) 321 WP_058018282.1 YfiM family lipoprotein -
  RDJ20_RS02705 (RDJ20_02705) comF 599655..600380 (-) 726 WP_121358352.1 ComF family protein Machinery gene
  RDJ20_RS02710 (RDJ20_02710) - 600519..600812 (-) 294 WP_033971433.1 hypothetical protein -
  RDJ20_RS02715 (RDJ20_02715) - 600866..601792 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  RDJ20_RS02720 (RDJ20_02720) - 601910..602668 (+) 759 WP_033971435.1 5-oxoprolinase subunit PxpA -
  RDJ20_RS02725 (RDJ20_02725) - 602745..602993 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RDJ20_RS02730 (RDJ20_02730) - 603004..604380 (+) 1377 WP_033971437.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RDJ20_RS02735 (RDJ20_02735) - 604382..605260 (+) 879 WP_033971439.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27111.65 Da        Isoelectric Point: 10.6153

>NTDB_id=800866 RDJ20_RS02705 WP_121358352.1 599655..600380(-) (comF) [Pseudomonas aeruginosa strain BJ86]
MSFPLRPLTHWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEYLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPARDVRGLHLALVDDVLTTGATAERLSRLLCRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=800866 RDJ20_RS02705 WP_121358352.1 599655..600380(-) (comF) [Pseudomonas aeruginosa strain BJ86]
ATGTCGTTCCCGCTTCGTCCTCTCACACACTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATAGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGTTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAATACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCCGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGATGTGCTCACCACCGGAGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGTGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386
  comFC Legionella pneumophila str. Paris

37.607

97.095

0.365