Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RG643_RS03500 Genome accession   NZ_CP133753
Coordinates   713909..714505 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain ZYPA187     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 708909..719505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG643_RS03475 (RG643_03470) - 709795..710172 (+) 378 WP_044062024.1 hypothetical protein -
  RG643_RS03485 (RG643_03480) - 710426..711292 (-) 867 WP_079387522.1 ABC transporter substrate-binding protein -
  RG643_RS03490 (RG643_03485) dnaX 711329..713458 (+) 2130 WP_309543335.1 DNA polymerase III subunit gamma/tau -
  RG643_RS03495 (RG643_03490) - 713504..713830 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  RG643_RS03500 (RG643_03495) recR 713909..714505 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  RG643_RS03505 (RG643_03500) - 714628..715776 (+) 1149 WP_044062179.1 acyl-CoA dehydrogenase family protein -
  RG643_RS03510 (RG643_03505) - 715789..716328 (-) 540 WP_003103931.1 CbrC family protein -
  RG643_RS03515 (RG643_03510) - 716402..717289 (-) 888 WP_023122609.1 SDR family oxidoreductase -
  RG643_RS03520 (RG643_03515) - 717286..718869 (-) 1584 WP_079387530.1 NAD(P)/FAD-dependent oxidoreductase -
  RG643_RS03525 (RG643_03520) - 718992..719159 (+) 168 Protein_702 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=800761 RG643_RS03500 WP_003087237.1 713909..714505(+) (recR) [Pseudomonas aeruginosa strain ZYPA187]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=800761 RG643_RS03500 WP_003087237.1 713909..714505(+) (recR) [Pseudomonas aeruginosa strain ZYPA187]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGTGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGATCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48