Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RG463_RS02375 Genome accession   NZ_CP133738
Coordinates   490678..491043 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain FI-17645     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 485678..496043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG463_RS02345 (RG463_02345) pyrR 486300..486812 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RG463_RS02350 (RG463_02350) ruvX 486924..487358 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  RG463_RS02355 (RG463_02355) - 487358..487927 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  RG463_RS02360 (RG463_02360) - 487976..488869 (-) 894 WP_003084580.1 TonB family protein -
  RG463_RS02365 (RG463_02365) gshB 489016..489969 (-) 954 WP_003100943.1 glutathione synthase -
  RG463_RS02370 (RG463_02370) pilG 490224..490631 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  RG463_RS02375 (RG463_02375) pilH 490678..491043 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  RG463_RS02380 (RG463_02380) - 491094..491630 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  RG463_RS02385 (RG463_02385) pilJ 491715..493763 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  RG463_RS02390 (RG463_02390) pilK 493824..494699 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=800560 RG463_RS02375 WP_003084587.1 490678..491043(+) (pilH) [Pseudomonas aeruginosa strain FI-17645]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=800560 RG463_RS02375 WP_003084587.1 490678..491043(+) (pilH) [Pseudomonas aeruginosa strain FI-17645]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364