Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RG462_RS03870 Genome accession   NZ_CP133737
Coordinates   787725..790562 (-) Length   945 a.a.
NCBI ID   WP_003093663.1    Uniprot ID   A0A0H2ZF88
Organism   Pseudomonas aeruginosa strain FI-14/157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 782725..795562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG462_RS03840 (RG462_03840) rpsK 782846..783235 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  RG462_RS03845 (RG462_03845) rpsD 783252..783872 (+) 621 WP_003093678.1 30S ribosomal protein S4 -
  RG462_RS03850 (RG462_03850) - 783895..784896 (+) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  RG462_RS03855 (RG462_03855) rplQ 784940..785329 (+) 390 WP_003093672.1 50S ribosomal protein L17 -
  RG462_RS03860 (RG462_03860) katA 785610..787058 (+) 1449 WP_003103909.1 catalase KatA -
  RG462_RS03865 (RG462_03865) bfr 787189..787653 (+) 465 WP_003093668.1 bacterioferritin -
  RG462_RS03870 (RG462_03870) uvrA 787725..790562 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  RG462_RS03875 (RG462_03875) - 790776..792164 (+) 1389 WP_003103910.1 MFS transporter -
  RG462_RS03880 (RG462_03880) ssb 792181..792678 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  RG462_RS03885 (RG462_03885) pchA 792767..794197 (-) 1431 WP_003093658.1 isochorismate synthase PchA -
  RG462_RS03890 (RG462_03890) pchB 794194..794499 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  RG462_RS03895 (RG462_03895) pchC 794499..795254 (-) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -

Sequence

Protein


Download         Length: 945 a.a.        Molecular weight: 104489.13 Da        Isoelectric Point: 6.6074

>NTDB_id=800466 RG462_RS03870 WP_003093663.1 787725..790562(-) (uvrA) [Pseudomonas aeruginosa strain FI-14/157]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYFQM
LGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKF
LSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYLTL
DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDI
GPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITG
VSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEAREFF
DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD
HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2838 bp        

>NTDB_id=800466 RG462_RS03870 WP_003093663.1 787725..790562(-) (uvrA) [Pseudomonas aeruginosa strain FI-14/157]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGTTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTGGAACCCAA
GCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACGCGCGCC
GGGTGGTCAATGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATG
CTCGGCTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAGCACCAGAAGGTGGT
GCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGTTCGCATCCCT
TCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCCAAGTTC
CTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGAC
GCTGCCGGCGATCACCGCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCCGTGGCG
AGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC
GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTGGG
AGTGATGTACATCCTCGATGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTCGGCACCCTCACCCACC
TGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTCGACATC
GGTCCGGGGGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGACTCGCT
GACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGATAAGAAGAAGCTGCTGA
AGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGG
GTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGCGACTAC
CCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCG
GTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG
GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGGCGACGG
CGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGACGTCTGCAAGGGCAAGCGCTACAACCGCG
AGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAGTTCTTC
GACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACACTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCAGAGCGC
GACCACCCTCTCGGGCGGCGAGGCACAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGT
ACATCCTCGACGAACCGACCACCGGCCTGCACTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGAC
CACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGTCCCGA
GGGCGGCTCCAAGGGTGGTCAGATCATCGCCAACGGCACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCC
ACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZF88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.233

100

0.574
  uvrA Streptococcus pneumoniae TIGR4

57.233

100

0.574
  uvrA Streptococcus pneumoniae D39

57.233

100

0.574