Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   P3K46_RS04495 Genome accession   NZ_CP119692
Coordinates   1002885..1003928 (+) Length   347 a.a.
NCBI ID   WP_014613481.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain CUVET18-80     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 997885..1008928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K46_RS04470 (P3K46_04420) - 998141..998863 (+) 723 WP_014613476.1 type 1 glutamine amidotransferase -
  P3K46_RS04475 (P3K46_04425) - 999831..1000829 (-) 999 WP_037542644.1 aromatic acid exporter family protein -
  P3K46_RS04480 (P3K46_04430) map 1000926..1001687 (+) 762 WP_014613478.1 type I methionyl aminopeptidase -
  P3K46_RS04485 (P3K46_04435) - 1001785..1002174 (+) 390 WP_014613479.1 hypothetical protein -
  P3K46_RS04490 (P3K46_04440) liaF 1002187..1002888 (+) 702 WP_110168740.1 cell wall-active antibiotics response protein LiaF -
  P3K46_RS04495 (P3K46_04445) vraS 1002885..1003928 (+) 1044 WP_014613481.1 sensor histidine kinase Regulator
  P3K46_RS04500 (P3K46_04450) vraR 1003918..1004547 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  P3K46_RS04505 (P3K46_04455) - 1005114..1005695 (-) 582 WP_015729388.1 carbonic anhydrase -
  P3K46_RS04510 (P3K46_04460) - 1005728..1007065 (-) 1338 WP_015729387.1 YihY/virulence factor BrkB family protein -
  P3K46_RS04515 (P3K46_04465) - 1007281..1007568 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  P3K46_RS04520 (P3K46_04470) - 1007576..1008034 (-) 459 WP_014613486.1 low molecular weight protein-tyrosine-phosphatase -
  P3K46_RS04525 (P3K46_04475) - 1008168..1008371 (+) 204 WP_014613487.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39939.24 Da        Isoelectric Point: 5.0435

>NTDB_id=800449 P3K46_RS04495 WP_014613481.1 1002885..1003928(+) (vraS) [Staphylococcus pseudintermedius strain CUVET18-80]
MNHYVRAIGSMLILVYSMLTAFFFIDKVFTNIIFFQGMFYTQILGIPVFIFLNLVVIFLCIIVGSVLAYKINQQNDWLKQ
QIVRAFEGETVGINDQQLELYNETIELYQALVPLNQELHKMRIKTQNLTNETYNLNDLKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETDLAPPLDQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKSLVTDLQRKVPIKVVQEI
DEFEVPKGIEDHLFRITQEAISNTLRHAEGTQVTVELLNRNDYLLLRIQDDGIGFNVDEKLEQSYGLKNMRERAIEIGAT
FHIVSLPDAGTRIEVKAPLEKEEQHDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=800449 P3K46_RS04495 WP_014613481.1 1002885..1003928(+) (vraS) [Staphylococcus pseudintermedius strain CUVET18-80]
ATGAATCACTACGTCCGAGCGATAGGTTCGATGCTCATTCTCGTATATAGTATGCTCACCGCGTTTTTCTTTATTGACAA
AGTGTTCACCAATATTATTTTCTTTCAAGGCATGTTTTATACACAAATTTTAGGTATTCCTGTTTTTATCTTTTTAAATT
TAGTCGTCATTTTTTTATGTATTATTGTGGGCAGTGTGTTAGCTTATAAAATCAATCAACAAAATGATTGGCTCAAGCAA
CAAATCGTTCGTGCCTTTGAAGGTGAAACAGTGGGCATCAATGATCAACAACTCGAGCTGTATAATGAAACGATTGAATT
ATATCAAGCACTCGTCCCATTAAATCAAGAATTGCATAAAATGCGAATTAAAACACAAAATTTAACGAATGAAACGTATA
ATTTAAATGATTTGAAGGTGAAAAAGATTATAGAAGATGAACGACAGCGTTTAGCACGAGAATTGCATGATAGTGTGTCG
CAACAACTTTTCGCGGCAAGTATGATGTTGTCTGCAATCAAAGAAACAGATTTAGCACCACCGTTAGACCAACAAATTCC
AACGTTAGAAAAAATGGTGCAAGACTCACAACTTGAAATGCGCGCTCTGTTACTTCACTTGAGACCTATAGGATTGAAGG
ACAAATCGTTAGGTGAGGGAATTAAATCGCTTGTGACGGATCTACAACGTAAAGTACCCATTAAAGTCGTGCAAGAAATT
GATGAGTTTGAAGTACCTAAAGGCATTGAGGATCACCTTTTTAGAATTACCCAAGAAGCGATTTCCAATACGTTACGACA
TGCTGAGGGGACGCAAGTAACGGTAGAATTACTTAACCGCAATGATTATTTATTGTTGCGTATACAAGATGACGGCATTG
GATTTAATGTCGATGAAAAGTTAGAACAAAGTTATGGATTAAAAAATATGCGTGAACGTGCAATAGAGATTGGTGCCACA
TTTCATATCGTCTCATTACCTGATGCGGGGACGAGAATAGAAGTGAAAGCACCACTTGAAAAGGAGGAACAGCATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

83.862

100

0.839