Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   P3K45_RS06460 Genome accession   NZ_CP119685
Coordinates   1409184..1410158 (-) Length   324 a.a.
NCBI ID   WP_014613820.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain CUVET18-1042     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1404184..1415158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K45_RS06425 (P3K45_06355) gcvT 1404758..1405849 (-) 1092 WP_015729161.1 glycine cleavage system aminomethyltransferase GcvT -
  P3K45_RS06430 (P3K45_06360) - 1406007..1406534 (-) 528 WP_096538142.1 shikimate kinase -
  P3K45_RS06435 (P3K45_06365) - 1406698..1407183 (-) 486 WP_080552896.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  P3K45_RS06440 (P3K45_06370) - 1407089..1407289 (-) 201 WP_020219623.1 hypothetical protein -
  P3K45_RS06445 (P3K45_06375) comGD 1407394..1407834 (-) 441 WP_014613823.1 competence type IV pilus minor pilin ComGD -
  P3K45_RS06450 (P3K45_06380) comGC 1407812..1408135 (-) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  P3K45_RS06455 (P3K45_06385) comGB 1408148..1409215 (-) 1068 WP_014613821.1 competence type IV pilus assembly protein ComGB -
  P3K45_RS06460 (P3K45_06390) comGA 1409184..1410158 (-) 975 WP_014613820.1 competence type IV pilus ATPase ComGA Machinery gene
  P3K45_RS06465 (P3K45_06395) - 1410319..1410948 (-) 630 WP_037542865.1 MBL fold metallo-hydrolase -
  P3K45_RS06470 (P3K45_06400) - 1410961..1411272 (-) 312 WP_014613818.1 MTH1187 family thiamine-binding protein -
  P3K45_RS06475 (P3K45_06405) - 1411273..1412259 (-) 987 WP_404952879.1 ROK family glucokinase -
  P3K45_RS06480 (P3K45_06410) - 1412256..1412459 (-) 204 WP_014613816.1 YqgQ family protein -
  P3K45_RS06485 (P3K45_06415) - 1412461..1413900 (-) 1440 WP_404952881.1 rhomboid family intramembrane serine protease -
  P3K45_RS06490 (P3K45_06420) - 1413919..1414458 (-) 540 WP_014613814.1 5-formyltetrahydrofolate cyclo-ligase -
  P3K45_RS06495 (P3K45_06425) rpmG 1414610..1414759 (-) 150 WP_014613813.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36846.58 Da        Isoelectric Point: 7.5584

>NTDB_id=800355 P3K45_RS06460 WP_014613820.1 1409184..1410158(-) (comGA) [Staphylococcus pseudintermedius strain CUVET18-1042]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=800355 P3K45_RS06460 WP_014613820.1 1409184..1410158(-) (comGA) [Staphylococcus pseudintermedius strain CUVET18-1042]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCGTCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

58.514

99.691

0.583
  comGA Staphylococcus aureus N315

58.514

99.691

0.583