Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RGU78_RS10010 Genome accession   NZ_CP133712
Coordinates   2102159..2102794 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain CRAb1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097159..2107794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS09985 (RGU78_10005) - 2097215..2098195 (-) 981 WP_001075408.1 DNA polymerase III subunit delta' -
  RGU78_RS09990 (RGU78_10010) kdsB 2098207..2098968 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RGU78_RS09995 (RGU78_10015) lpxK 2098978..2099988 (-) 1011 WP_000050449.1 tetraacyldisaccharide 4'-kinase -
  RGU78_RS10000 (RGU78_10020) msbA 2099991..2101718 (-) 1728 WP_001070727.1 lipid A export permease/ATP-binding protein MsbA -
  RGU78_RS10005 (RGU78_10025) - 2101715..2102143 (-) 429 WP_000669683.1 biopolymer transporter ExbD -
  RGU78_RS10010 (RGU78_10030) exbB 2102159..2102794 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RGU78_RS10015 (RGU78_10035) - 2102844..2103731 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RGU78_RS10020 (RGU78_10040) - 2103728..2104510 (-) 783 WP_000057212.1 ParA family protein -
  RGU78_RS10025 (RGU78_10045) rsmG 2104532..2105164 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RGU78_RS10030 (RGU78_10050) murU 2105252..2105941 (-) 690 WP_000646465.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RGU78_RS10035 (RGU78_10055) - 2105941..2106954 (-) 1014 WP_001096100.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=800341 RGU78_RS10010 WP_000264037.1 2102159..2102794(-) (exbB) [Acinetobacter baumannii strain CRAb1]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=800341 RGU78_RS10010 WP_000264037.1 2102159..2102794(-) (exbB) [Acinetobacter baumannii strain CRAb1]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393