Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P0092_RS10250 Genome accession   NZ_CP119677
Coordinates   2191629..2192537 (+) Length   302 a.a.
NCBI ID   WP_004622286.1    Uniprot ID   F1TI65
Organism   Ruminiclostridium papyrosolvens DSM 2782     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2186629..2197537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0092_RS10240 (P0092_10240) tnpA 2187313..2187768 (+) 456 WP_004616633.1 IS200/IS605 family transposase -
  P0092_RS10245 (P0092_10245) smc 2187971..2191543 (+) 3573 WP_004622285.1 chromosome segregation protein SMC -
  P0092_RS10250 (P0092_10250) pilA 2191629..2192537 (+) 909 WP_004622286.1 signal recognition particle-docking protein FtsY Machinery gene
  P0092_RS10255 (P0092_10255) - 2192565..2195393 (+) 2829 WP_004622287.1 UPF0182 family protein -
  P0092_RS10260 (P0092_10260) - 2195647..2197527 (+) 1881 WP_004622288.1 APC family permease -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 32939.13 Da        Isoelectric Point: 4.8838

>NTDB_id=800251 P0092_RS10250 WP_004622286.1 2191629..2192537(+) (pilA) [Ruminiclostridium papyrosolvens DSM 2782]
MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFDELEEILITSDIGIETTMKVIEDLKEKVKDRKIIDPKDVKGLL
KETLKEILEKGGNEMNLNTKPSVIIVIGVNGVGKTTSIGKIANLYKSQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTEII
MQKEGSDPAAVIFDAVQAAKSRNADLLICDTAGRLHTKKNLMEELKKVSRVLERELPGADRETLLVLDATTGQNAIAQAK
TFSETSDITGIVLTKLDGTAKGGIVVAIKSELDIPVKLIGVGEQLDDLQKFDAGEFIEALFS

Nucleotide


Download         Length: 909 bp        

>NTDB_id=800251 P0092_RS10250 WP_004622286.1 2191629..2192537(+) (pilA) [Ruminiclostridium papyrosolvens DSM 2782]
ATGGGATTTTTTGACAAACTTAAAGAAGGACTTCAAAAAACACGTAAAAGCATAACTGAAAAAATAGACCAAGTACTTGT
TTCTTTTGGAAAGGTTGACGAAGAACTCTTTGATGAACTTGAGGAGATTTTGATTACTTCTGACATTGGAATAGAAACAA
CAATGAAAGTTATAGAAGATTTGAAAGAAAAAGTAAAAGATAGGAAGATAATTGACCCGAAAGATGTAAAAGGCCTGCTC
AAGGAAACACTTAAAGAAATACTTGAAAAGGGCGGTAATGAAATGAATCTCAATACAAAACCGTCTGTTATTATAGTAAT
AGGAGTAAATGGAGTCGGTAAGACAACCTCTATAGGTAAAATTGCAAATTTGTATAAAAGTCAGGGTAAAAAAGTGCTGT
TAGCAGCAGGAGATACCTTCAGAGCAGCAGCTATTGACCAACTGGAGGTCTGGGCACAAAGAGTGGGTACCGAGATAATA
ATGCAAAAGGAGGGTTCAGACCCGGCAGCTGTTATATTTGATGCTGTGCAGGCTGCTAAGTCCAGAAATGCAGACCTTTT
GATATGCGATACTGCAGGAAGGCTTCACACCAAAAAGAATCTTATGGAAGAACTTAAAAAGGTTTCAAGAGTACTTGAAA
GGGAACTTCCGGGAGCAGACAGAGAAACGCTTCTGGTTCTTGACGCAACTACAGGTCAGAATGCCATTGCACAGGCAAAA
ACCTTCAGCGAAACCTCTGATATTACAGGTATAGTATTAACAAAATTGGATGGAACCGCCAAAGGAGGAATAGTTGTAGC
CATTAAATCAGAGCTTGATATACCTGTAAAATTGATAGGCGTAGGAGAACAGCTGGATGACTTGCAGAAATTTGATGCAG
GGGAGTTTATAGAAGCCTTGTTTTCATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(19-84)

SRP54-type protein, GTPase domain (SRP54)

(101-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1TI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.855

100

0.48