Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PX690_RS20155 Genome accession   NZ_CP119675
Coordinates   4013726..4014016 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain 160     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4008726..4019016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX690_RS20115 (PX690_20115) darA 4008743..4009072 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  PX690_RS20120 (PX690_20120) - 4009085..4009525 (+) 441 WP_004264730.1 DUF327 family protein -
  PX690_RS20125 (PX690_20125) holB 4009537..4010526 (+) 990 WP_058906507.1 DNA polymerase III subunit delta' -
  PX690_RS20130 (PX690_20130) ricT 4010529..4011356 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  PX690_RS20135 (PX690_20135) yabA 4011371..4011730 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  PX690_RS20140 (PX690_20140) - 4011791..4012534 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PX690_RS20145 (PX690_20145) - 4012521..4012820 (+) 300 WP_160249139.1 GIY-YIG nuclease family protein -
  PX690_RS20150 (PX690_20150) rsmI 4012795..4013676 (+) 882 WP_276123287.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PX690_RS20155 (PX690_20155) abrB 4013726..4014016 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  PX690_RS20160 (PX690_20160) metG 4014499..4016490 (+) 1992 WP_015388789.1 methionine--tRNA ligase -
  PX690_RS20165 (PX690_20165) - 4016566..4017333 (+) 768 WP_058906508.1 TatD family hydrolase -
  PX690_RS20170 (PX690_20170) - 4017468..4018793 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=800227 PX690_RS20155 WP_169510469.1 4013726..4014016(-) (abrB) [Bacillus velezensis strain 160]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=800227 PX690_RS20155 WP_169510469.1 4013726..4014016(-) (abrB) [Bacillus velezensis strain 160]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979