Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PX690_RS18705 Genome accession   NZ_CP119675
Coordinates   3715584..3716021 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain 160     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3710584..3721021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX690_RS18690 (PX690_18690) - 3713442..3713804 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  PX690_RS18695 (PX690_18695) hxlA 3714036..3714671 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  PX690_RS18700 (PX690_18700) hxlB 3714668..3715225 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  PX690_RS18705 (PX690_18705) nucA/comI 3715584..3716021 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PX690_RS18710 (PX690_18710) nin/comJ 3716043..3716441 (+) 399 WP_014304317.1 competence protein ComJ Regulator
  PX690_RS18715 (PX690_18715) - 3716482..3716700 (-) 219 Protein_3704 family 1 glycosylhydrolase -
  PX690_RS18720 (PX690_18720) - 3716919..3717239 (-) 321 WP_014304315.1 YckD family protein -
  PX690_RS18725 (PX690_18725) - 3717311..3717745 (-) 435 WP_003156592.1 RDD family protein -
  PX690_RS18730 (PX690_18730) - 3717760..3718896 (-) 1137 WP_109567707.1 zinc-dependent alcohol dehydrogenase -
  PX690_RS18735 (PX690_18735) - 3718961..3720163 (-) 1203 WP_014304313.1 GTP-binding protein -
  PX690_RS18740 (PX690_18740) - 3720316..3720441 (+) 126 Protein_3709 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=800222 PX690_RS18705 WP_003156588.1 3715584..3716021(+) (nucA/comI) [Bacillus velezensis strain 160]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=800222 PX690_RS18705 WP_003156588.1 3715584..3716021(+) (nucA/comI) [Bacillus velezensis strain 160]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGTCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641