Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   RFN65_RS20760 Genome accession   NZ_CP133703
Coordinates   4025464..4025694 (-) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4020464..4030694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS20750 (RFN65_20750) spoVT 4021189..4021725 (-) 537 WP_003218365.1 stage V sporulation protein T -
  RFN65_RS20755 (RFN65_20755) mfd 4021861..4025394 (-) 3534 WP_309529925.1 transcription-repair coupling factor -
  RFN65_RS20760 (RFN65_20760) subA/fin 4025464..4025694 (-) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  RFN65_RS20765 (RFN65_20765) pth 4025752..4026318 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  RFN65_RS20770 (RFN65_20770) rplYB 4026425..4027039 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  RFN65_RS20775 (RFN65_20775) prsS 4027124..4028077 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  RFN65_RS20780 (RFN65_20780) glmU 4028100..4029470 (-) 1371 WP_309529926.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  RFN65_RS20785 (RFN65_20785) spoVG 4029663..4029956 (-) 294 WP_003218346.1 septation regulator SpoVG -
  RFN65_RS20790 (RFN65_20790) ridA 4030151..4030528 (-) 378 WP_100506891.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=800213 RFN65_RS20760 WP_015482693.1 4025464..4025694(-) (subA/fin) [Bacillus subtilis strain CP35]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=800213 RFN65_RS20760 WP_015482693.1 4025464..4025694(-) (subA/fin) [Bacillus subtilis strain CP35]
ATGGCTTTACATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987